Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 SNORD50.1-201ENST00000362987 71 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 SNORD81.2-201ENST00000365153 76 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 Y_RNA.482-201ENST00000384377 111 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 RNU6-790P-201ENST00000384479 105 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 MIR521-1-201ENST00000384902 87 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 AL023284.1-201ENST00000403956 276 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 AL590556.1-201ENST00000423231 483 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 CR769767.1-201ENST00000436337 346 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 AC107399.1-201ENST00000451226 265 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 AC079354.2-201ENST00000453523 154 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 AC132942.1-201ENST00000486753 483 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 AC018868.1-201ENST00000491307 315 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 RNA5SP200-201ENST00000516360 103 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 SNORA31.16-201ENST00000516773 139 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 RNU1-54P-201ENST00000517181 120 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 CBX3P7-201ENST00000532876 502 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 NDUFA5P6-201ENST00000542110 379 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 AC009318.2-201ENST00000610917 651 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 PCGEM1.1-201ENST00000613431 131 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 WT1-AS_8.1-201ENST00000615200 275 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 MIR203B-201ENST00000636080 86 ntBASIC2.11□□□□□ -2.07
CCDC3Q9BQI4 MTND4P12-201ENST00000498999 1377 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 Y_RNA.123-201ENST00000363338 102 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 SNORA72.1-201ENST00000363485 129 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 SNORA29-201ENST00000384183 140 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 RNU2-48P-201ENST00000410694 191 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 MTND4P18-201ENST00000447010 465 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 AC068781.1-201ENST00000488231 618 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 SCARNA16.3-201ENST00000516595 184 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 RNA5SP402-201ENST00000517148 110 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 AC022616.8-201ENST00000533569 253 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 CYCSP26-201ENST00000534107 320 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 AC005668.1-201ENST00000571142 476 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 MIR3976-201ENST00000606807 139 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 MIR6840-201ENST00000611937 71 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 AC025253.1-201ENST00000613623 543 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 AC098657.3-201ENST00000620434 263 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 AC009831.4-201ENST00000620744 325 ntBASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
CCDC3Q9BQI4 AC092881.1-201ENST00000638218 2733 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 AL596028.1-201ENST00000326971 197 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 snoU2_19.1-201ENST00000362361 80 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 Y_RNA.303-201ENST00000364998 94 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 SNORA25B-201ENST00000365507 128 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 RNU6-1032P-201ENST00000384100 107 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 RNU6-611P-201ENST00000384276 104 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 Y_RNA.490-201ENST00000384413 102 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 IPO7P1-201ENST00000442031 636 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 AC009238.1-201ENST00000442165 424 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 AC009237.6-201ENST00000446969 424 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 AC145146.1-201ENST00000496370 254 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 AC005741.1-201ENST00000511094 432 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 RNU6-1016P-201ENST00000516689 94 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 EIF4A1P12-201ENST00000551910 141 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 AL121579.1-201ENST00000555129 305 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 MIR5694-201ENST00000581190 76 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 AL132822.1-201ENST00000617063 513 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 SCARNA4-201ENST00000629045 128 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 AC099654.5-201ENST00000636479 350 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.09□□□□□ -2.07
CCDC3Q9BQI4 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.08
CCDC3Q9BQI4 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
CCDC3Q9BQI4 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.08
CCDC3Q9BQI4 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
CCDC3Q9BQI4 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 RNU1-23P-201ENST00000363361 144 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 U3.9-201ENST00000363823 204 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 SNORD115-32-201ENST00000364079 82 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 RNU6-546P-201ENST00000383991 107 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 RNU6-968P-201ENST00000384076 107 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 RNU1-148P-201ENST00000384472 162 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 SNORA80E-201ENST00000384744 137 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 RNU6-482P-201ENST00000391068 107 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 MIR548F5-201ENST00000408421 86 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 Y_RNA.597-201ENST00000410463 100 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms