Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNU7-110P-201ENST00000516891 62 ntBASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 AC027288.2-201ENST00000553028 243 ntBASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 MIR4644-201ENST00000579929 84 ntBASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 MIR3910-1-201ENST00000580936 111 ntBASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 AL162424.1-201ENST00000602325 221 ntBASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 AC019159.1-201ENST00000605094 187 ntBASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 AL138963.2-201ENST00000605137 226 ntBASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 RMST_8.1-201ENST00000610287 165 ntBASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
USHBP1Q8N6Y0 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 FAM35BP-202ENST00000497389 3337 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 RNA5SP361-201ENST00000362686 118 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-1159P-201ENST00000362933 107 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 Y_RNA.122-201ENST00000363331 96 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-626P-201ENST00000363354 107 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-884P-201ENST00000363889 107 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-740P-201ENST00000364734 105 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 Y_RNA.286-201ENST00000364813 102 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 Y_RNA.319-201ENST00000365138 92 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 RNU1-100P-201ENST00000365255 165 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 SNORA9.2-201ENST00000365361 133 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 MIR10B-201ENST00000385011 110 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-159P-201ENST00000391080 106 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 RNU4-30P-201ENST00000410245 143 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 AL390729.2-201ENST00000416137 156 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 AC073901.1-201ENST00000462471 408 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 MIR4423-201ENST00000580922 80 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 AC010620.2-201ENST00000600135 313 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 AL110115.1-201ENST00000614396 364 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 HAUS6P2-201ENST00000433254 2404 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 AL079305.1-201ENST00000623159 3008 ntBASIC3.81□□□□□ -1.8
USHBP1Q8N6Y0 AL035425.3-201ENST00000564206 4996 ntBASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 SNORD56.3-201ENST00000363507 71 ntBASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 Y_RNA.292-201ENST00000364904 97 ntBASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 U8.10-201ENST00000384260 133 ntBASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 MIR544A-201ENST00000384855 91 ntBASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 MTCO1P5-201ENST00000433573 344 ntBASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 SNORA70.14-201ENST00000516205 110 ntBASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-255P-201ENST00000516957 105 ntBASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-58P-201ENST00000517143 103 ntBASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 AC087441.2-201ENST00000529141 262 ntBASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 NACAP3-201ENST00000552100 481 ntBASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 MIR5695-201ENST00000579717 85 ntBASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 MIR3133-201ENST00000583157 78 ntBASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 SNORA43.4-201ENST00000629559 138 ntBASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
USHBP1Q8N6Y0 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 AC096644.4-201ENST00000563417 2912 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-1145P-201ENST00000384246 107 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-851P-201ENST00000384565 107 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 MIR329-1-201ENST00000385028 80 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 NDUFS5P4-201ENST00000412983 318 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 COX6CP10-201ENST00000416832 224 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 AL358075.3-201ENST00000426289 226 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 GPM6BP3-201ENST00000442797 145 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 SNRPGP7-201ENST00000469016 106 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 RPL26P26-201ENST00000480251 434 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 AC016632.1-201ENST00000503994 196 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-1231P-201ENST00000517185 103 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 HSPE1P4-201ENST00000550617 308 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 MIR5571-201ENST00000577998 113 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
USHBP1Q8N6Y0 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-858P-201ENST00000362436 107 ntBASIC3.78□□□□□ -1.8
USHBP1Q8N6Y0 Y_RNA.230-201ENST00000364348 109 ntBASIC3.78□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-1141P-201ENST00000364520 107 ntBASIC3.78□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-1280P-201ENST00000365211 107 ntBASIC3.78□□□□□ -1.8
USHBP1Q8N6Y0 RNU6-20P-201ENST00000384106 107 ntBASIC3.78□□□□□ -1.8
USHBP1Q8N6Y0 FTH1P15-201ENST00000406984 280 ntBASIC3.78□□□□□ -1.8
USHBP1Q8N6Y0 RPL32P35-201ENST00000415214 394 ntBASIC3.78□□□□□ -1.8
USHBP1Q8N6Y0 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.78□□□□□ -1.8
USHBP1Q8N6Y0 AC063976.3-201ENST00000426849 329 ntBASIC3.78□□□□□ -1.8
USHBP1Q8N6Y0 AC078809.1-201ENST00000427601 140 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms