Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC-0.16□□□□□ -2.44
USF3Q68DE3 AC010531.2-201ENST00000465012 153 ntBASIC-0.16□□□□□ -2.44
USF3Q68DE3 AC114981.1-201ENST00000503897 678 ntBASIC-0.16□□□□□ -2.44
USF3Q68DE3 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC-0.16□□□□□ -2.44
USF3Q68DE3 SLC2A13P1-201ENST00000531560 322 ntBASIC-0.16□□□□□ -2.44
USF3Q68DE3 ZNF519P3-201ENST00000557158 1032 ntBASIC-0.16□□□□□ -2.44
USF3Q68DE3 AC006927.4-201ENST00000639187 543 ntBASIC-0.16□□□□□ -2.44
USF3Q68DE3 Y_RNA.142-201ENST00000363491 102 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 RNU6-72P-201ENST00000384285 79 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 RNU6-43P-201ENST00000384302 107 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 Y_RNA.571-201ENST00000384753 98 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 SNORD105-201ENST00000386910 85 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC-0.17□□□□□ -2.44
USF3Q68DE3 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC-0.17□□□□□ -2.44
USF3Q68DE3 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC-0.17□□□□□ -2.44
USF3Q68DE3 ZNF886P-201ENST00000450781 723 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC-0.17□□□□□ -2.44
USF3Q68DE3 AC109446.1-201ENST00000566172 220 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 MTCYBP33-201ENST00000575007 1130 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 AC011195.1-201ENST00000578177 177 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 MIR1273C-201ENST00000578669 77 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC-0.17□□□□□ -2.44
USF3Q68DE3 AC091135.1-201ENST00000585943 307 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 AC004223.2-201ENST00000590309 544 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 CTHRC1P1-201ENST00000605383 469 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 AL451064.1-201ENST00000607718 471 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 MIR18A-201ENST00000362310 71 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 RNU6-142P-201ENST00000384019 107 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 MIR653-201ENST00000385279 96 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 SNORA12.2-201ENST00000391040 156 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 AL354692.1-201ENST00000423044 315 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC-0.17□□□□□ -2.44
USF3Q68DE3 SNRPEP8-201ENST00000442866 260 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 MTND5P2-201ENST00000442927 1142 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 STAG3L5P-204ENST00000443759 179 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC-0.17□□□□□ -2.44
USF3Q68DE3 RN7SKP287-201ENST00000516546 266 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC-0.17□□□□□ -2.44
USF3Q68DE3 TMF1P1-201ENST00000576058 373 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 AL391903.3-201ENST00000612158 163 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 AC136475.10-201ENST00000620253 385 ntBASIC-0.17□□□□□ -2.44
USF3Q68DE3 RNA5SP264-201ENST00000363115 107 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 U8.7-201ENST00000364940 136 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 MTCO2P34-201ENST00000421994 607 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC-0.18□□□□□ -2.44
USF3Q68DE3 AC003071.1-201ENST00000451219 789 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 RPS3AP17-201ENST00000472594 777 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 AC069113.3-201ENST00000521019 150 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 LRRC6P1-201ENST00000532188 885 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 MIR4742-201ENST00000581069 85 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 AL929325.1-201ENST00000603096 117 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 AC018889.1-201ENST00000605372 397 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 AC100814.1-201ENST00000606963 623 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 AC007014.2-201ENST00000615581 479 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC-0.18□□□□□ -2.44
USF3Q68DE3 RNU4-56P-201ENST00000364700 142 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC-0.18□□□□□ -2.44
USF3Q68DE3 RNU6-843P-201ENST00000384454 104 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC-0.18□□□□□ -2.44
USF3Q68DE3 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC-0.18□□□□□ -2.44
USF3Q68DE3 C1DP2-201ENST00000418167 426 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 MTCO2P1-201ENST00000424648 477 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 AL356583.2-201ENST00000426536 280 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 TPTE2P1-204ENST00000435256 593 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC-0.18□□□□□ -2.44
USF3Q68DE3 MTND1P31-201ENST00000449206 961 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 C1DP4-201ENST00000455429 424 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 SCARNA8-201ENST00000515924 131 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 RNU6-1146P-201ENST00000516282 102 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 RNU6-567P-201ENST00000516746 107 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC-0.18□□□□□ -2.44
USF3Q68DE3 UBE2Q2P8-201ENST00000560644 102 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC-0.18□□□□□ -2.44
USF3Q68DE3 AC080078.2-201ENST00000603766 501 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 PRELID3BP2-201ENST00000605362 201 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 AP000943.4-201ENST00000622912 357 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 AC092656.1-203ENST00000624134 423 ntBASIC-0.18□□□□□ -2.44
USF3Q68DE3 RNU6-97P-201ENST00000363387 104 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 SNORD114-28-201ENST00000363610 72 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC-0.19□□□□□ -2.44
USF3Q68DE3 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC-0.19□□□□□ -2.44
USF3Q68DE3 AC073910.1-201ENST00000445047 438 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 MTCO3P9-201ENST00000506989 781 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 HMGB1P28-201ENST00000507778 552 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 MTND1P22-201ENST00000510572 951 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 AC012414.2-201ENST00000559474 187 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC-0.19□□□□□ -2.44
USF3Q68DE3 AL355816.2-201ENST00000610049 647 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC-0.19□□□□□ -2.44
USF3Q68DE3 MIR1322-201ENST00000638013 71 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 MIR573-201ENST00000384964 99 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC-0.19□□□□□ -2.44
USF3Q68DE3 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC-0.19□□□□□ -2.44
USF3Q68DE3 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC-0.19□□□□□ -2.44
USF3Q68DE3 MTCO3P10-201ENST00000455912 772 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC-0.19□□□□□ -2.44
USF3Q68DE3 AC104136.1-201ENST00000512969 394 ntBASIC-0.19□□□□□ -2.44
USF3Q68DE3 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC-0.19□□□□□ -2.44
USF3Q68DE3 RN7SKP12-201ENST00000516275 143 ntBASIC-0.19□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms