| CHCHD2P9 | Q5T1J5 | Y_RNA.598-201 | ENST00000410480 | 95 nt | BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | RPL37P10-201 | ENST00000412884 | 288 nt | BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | MTCO1P21-201 | ENST00000416634 | 589 nt | BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AL135908.1-201 | ENST00000431394 | 446 nt | TSL 3 BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | DYNLT3P2-201 | ENST00000442517 | 295 nt | BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AL031274.1-201 | ENST00000450334 | 232 nt | BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC022445.1-201 | ENST00000457499 | 408 nt | TSL 3 BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | snoU13.27-201 | ENST00000459278 | 104 nt | BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC007547.1-201 | ENST00000462177 | 490 nt | BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | RNU7-40P-201 | ENST00000516397 | 64 nt | BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-410P-201 | ENST00000517006 | 107 nt | BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | EIF4A1P12-201 | ENST00000551910 | 141 nt | BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC093012.1-201 | ENST00000552999 | 446 nt | TSL 3 BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | MIR5000-201 | ENST00000577717 | 103 nt | BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC025887.1-201 | ENST00000578349 | 264 nt | TSL 3 BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | Z98751.3-201 | ENST00000604447 | 521 nt | BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC097717.1-249 | ENST00000608040 | 401 nt | TSL 5 BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC009033.1-201 | ENST00000624279 | 431 nt | BASIC | 0.77 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | KLRF1-202 | ENST00000354855 | 838 nt | TSL 1 (best) BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | RNY4P34-201 | ENST00000364779 | 95 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-877P-201 | ENST00000383868 | 107 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | Y_RNA.504-201 | ENST00000384481 | 104 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | MIR194-1-201 | ENST00000384892 | 85 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AL117342.1-201 | ENST00000404861 | 406 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AL135923.1-201 | ENST00000413066 | 196 nt | TSL 3 BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AL117339.3-201 | ENST00000418733 | 162 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | C5orf58-201 | ENST00000421269 | 406 nt | APPRIS ALT2 TSL 2 BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC005009.1-201 | ENST00000423979 | 269 nt | TSL 2 BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | RPL23AP95-201 | ENST00000426806 | 265 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AL133396.1-201 | ENST00000432048 | 687 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | MTCO3P29-201 | ENST00000432119 | 779 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | PLCE1-AS2-203 | ENST00000433038 | 396 nt | TSL 2 BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC112518.1-201 | ENST00000436089 | 575 nt | TSL 4 BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC092944.1-205 | ENST00000494885 | 517 nt | TSL 4 BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC016632.1-201 | ENST00000503994 | 196 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC104663.1-201 | ENST00000508555 | 557 nt | TSL 2 BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | NAF1-205 | ENST00000509434 | 385 nt | TSL 3 BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC091874.1-201 | ENST00000511402 | 339 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | RN7SKP49-201 | ENST00000516675 | 260 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AL512310.8-201 | ENST00000550183 | 120 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC103996.1-201 | ENST00000555468 | 102 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | PWRN1-203 | ENST00000564898 | 389 nt | TSL 5 BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC009145.3-201 | ENST00000567386 | 476 nt | TSL 3 BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC090517.1-201 | ENST00000569307 | 266 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC091805.2-201 | ENST00000603848 | 235 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AL356157.2-201 | ENST00000605122 | 111 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | CTHRC1P1-201 | ENST00000605383 | 469 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AL365434.2-201 | ENST00000607979 | 234 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AL450472.1-202 | ENST00000637286 | 180 nt | BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | CYLC1-201 | ENST00000329312 | 2106 nt | APPRIS P3 TSL 1 (best) BASIC | 0.76 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | MGAT4C-209 | ENST00000611864 | 25116 nt | APPRIS P1 TSL 5 BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | RNU1-76P-201 | ENST00000362903 | 159 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | Y_RNA.132-201 | ENST00000363421 | 102 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-1214P-201 | ENST00000363650 | 109 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | SNORA36A-201 | ENST00000384221 | 132 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | CPEB3_ribozyme.1-201 | ENST00000408115 | 78 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | RNU6ATAC27P-201 | ENST00000408289 | 119 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | ZRANB2-AS2-201 | ENST00000411721 | 518 nt | TSL 3 BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | SNX2P2-201 | ENST00000424553 | 323 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AL593851.1-201 | ENST00000426171 | 157 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AL360175.1-201 | ENST00000426547 | 285 nt | TSL 5 BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | PLCB1-IT1-201 | ENST00000441231 | 373 nt | TSL 3 BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC073910.1-201 | ENST00000445047 | 438 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC132479.1-201 | ENST00000449160 | 144 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | MTND2P39-201 | ENST00000457230 | 764 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | MTCO2P6-201 | ENST00000463134 | 685 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | MTND2P14-201 | ENST00000482139 | 351 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | RPS23P5-201 | ENST00000495419 | 428 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC093292.1-201 | ENST00000505050 | 449 nt | TSL 3 BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | LYRM7-202 | ENST00000507584 | 317 nt | TSL 2 BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AK3P2-201 | ENST00000507976 | 429 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-856P-201 | ENST00000516959 | 98 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC090124.1-201 | ENST00000525097 | 448 nt | TSL 3 BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | LINC02311-201 | ENST00000556144 | 383 nt | TSL 3 BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | CYP4A27P-201 | ENST00000567218 | 190 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | MIR4775-201 | ENST00000581168 | 75 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | MZT1P2-201 | ENST00000604387 | 248 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AL022161.1-201 | ENST00000604390 | 213 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC008945.2-201 | ENST00000606056 | 604 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AL355512.1-202 | ENST00000607952 | 209 nt | TSL 5 BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC008250.2-201 | ENST00000615261 | 205 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC008147.4-201 | ENST00000617570 | 1204 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC126177.8-201 | ENST00000618339 | 1015 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | MIR8065-201 | ENST00000620577 | 100 nt | BASIC | 0.75 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | ANGPTL3-201 | ENST00000371129 | 2805 nt | APPRIS P1 TSL 1 (best) BASIC | 0.74 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | MT-ND2-201 | ENST00000361453 | 1042 nt | APPRIS P1 BASIC | 0.74 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | RNY1-201 | ENST00000364228 | 113 nt | BASIC | 0.74 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-827P-201 | ENST00000365553 | 106 nt | BASIC | 0.74 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-1029P-201 | ENST00000384109 | 107 nt | BASIC | 0.74 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | MIR454-201 | ENST00000390180 | 115 nt | BASIC | 0.74 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | MIR208B-201 | ENST00000401172 | 77 nt | BASIC | 0.74 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-195P-201 | ENST00000411352 | 109 nt | BASIC | 0.74 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | LINC01853-201 | ENST00000417715 | 444 nt | TSL 3 BASIC | 0.74 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC060773.1-201 | ENST00000421698 | 310 nt | BASIC | 0.74 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | CST2P1-201 | ENST00000425770 | 87 nt | BASIC | 0.74 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | GPR143P-201 | ENST00000434155 | 205 nt | BASIC | 0.74 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AL596276.1-201 | ENST00000434465 | 418 nt | BASIC | 0.74 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC002486.1-201 | ENST00000435098 | 391 nt | BASIC | 0.74 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | AC069257.2-201 | ENST00000441819 | 155 nt | BASIC | 0.74 | □□□□□ -2.29 | | |
| CHCHD2P9 | Q5T1J5 | PRPS1P1-201 | ENST00000445305 | 876 nt | BASIC | 0.74 | □□□□□ -2.29 | | |