Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC091179.1-201ENST00000461606 579 ntBASIC3.74□□□□□ -1.81
LIG3P49916 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.74□□□□□ -1.81
LIG3P49916 RNU6-966P-201ENST00000516479 104 ntBASIC3.74□□□□□ -1.81
LIG3P49916 RNU6-107P-201ENST00000516643 102 ntBASIC3.74□□□□□ -1.81
LIG3P49916 RNU6-711P-201ENST00000517255 106 ntBASIC3.74□□□□□ -1.81
LIG3P49916 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.74□□□□□ -1.81
LIG3P49916 MIR5006-201ENST00000583027 110 ntBASIC3.74□□□□□ -1.81
LIG3P49916 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.74□□□□□ -1.81
LIG3P49916 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.74□□□□□ -1.81
LIG3P49916 AC069528.2-201ENST00000624849 1991 ntBASIC3.74□□□□□ -1.81
LIG3P49916 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.74□□□□□ -1.81
LIG3P49916 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC3.73□□□□□ -1.81
LIG3P49916 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
LIG3P49916 AL161912.2-201ENST00000565707 3007 ntBASIC3.73□□□□□ -1.81
LIG3P49916 SNORA73.2-201ENST00000364946 201 ntBASIC3.73□□□□□ -1.81
LIG3P49916 RNU6-805P-201ENST00000365643 106 ntBASIC3.73□□□□□ -1.81
LIG3P49916 SNORA5A-201ENST00000384111 134 ntBASIC3.73□□□□□ -1.81
LIG3P49916 RNU6-662P-201ENST00000384253 104 ntBASIC3.73□□□□□ -1.81
LIG3P49916 RNA5SP424-201ENST00000390988 115 ntBASIC3.73□□□□□ -1.81
LIG3P49916 RNA5SP354-201ENST00000391247 136 ntBASIC3.73□□□□□ -1.81
LIG3P49916 RNU2-54P-201ENST00000410299 190 ntBASIC3.73□□□□□ -1.81
LIG3P49916 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
LIG3P49916 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.73□□□□□ -1.81
LIG3P49916 SNORD2.1-201ENST00000458762 69 ntBASIC3.73□□□□□ -1.81
LIG3P49916 U3.44-201ENST00000458938 192 ntBASIC3.73□□□□□ -1.81
LIG3P49916 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC3.73□□□□□ -1.81
LIG3P49916 AC107393.1-201ENST00000512403 346 ntBASIC3.73□□□□□ -1.81
LIG3P49916 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.73□□□□□ -1.81
LIG3P49916 AC006380.1-201ENST00000603598 186 ntBASIC3.73□□□□□ -1.81
LIG3P49916 AL670379.2-201ENST00000604983 252 ntBASIC3.73□□□□□ -1.81
LIG3P49916 AC073349.3-201ENST00000617616 186 ntBASIC3.73□□□□□ -1.81
LIG3P49916 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
LIG3P49916 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
LIG3P49916 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
LIG3P49916 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
LIG3P49916 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
LIG3P49916 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.72□□□□□ -1.81
LIG3P49916 RNU4-80P-201ENST00000363200 141 ntBASIC3.72□□□□□ -1.81
LIG3P49916 SNORA18.2-201ENST00000383865 132 ntBASIC3.72□□□□□ -1.81
LIG3P49916 PCNPP3-201ENST00000393579 471 ntBASIC3.72□□□□□ -1.81
LIG3P49916 AC009237.7-201ENST00000447357 229 ntBASIC3.72□□□□□ -1.81
LIG3P49916 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.72□□□□□ -1.81
LIG3P49916 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.72□□□□□ -1.81
LIG3P49916 AP002001.1-203ENST00000534002 267 ntBASIC3.72□□□□□ -1.81
LIG3P49916 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.72□□□□□ -1.81
LIG3P49916 AC011921.3-201ENST00000605540 361 ntBASIC3.72□□□□□ -1.81
LIG3P49916 AL034408.1-202ENST00000636088 415 ntBASIC3.72□□□□□ -1.81
LIG3P49916 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
LIG3P49916 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.72□□□□□ -1.81
LIG3P49916 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.72□□□□□ -1.81
LIG3P49916 AL359854.1-201ENST00000614203 1594 ntBASIC3.72□□□□□ -1.81
LIG3P49916 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
LIG3P49916 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.71□□□□□ -1.81
LIG3P49916 AC058791.1-201ENST00000608412 3198 ntBASIC3.71□□□□□ -1.82
LIG3P49916 snoU2_19.1-201ENST00000362361 80 ntBASIC3.71□□□□□ -1.82
LIG3P49916 RNU6-545P-201ENST00000362681 104 ntBASIC3.71□□□□□ -1.82
LIG3P49916 RNA5SP51-201ENST00000364750 119 ntBASIC3.71□□□□□ -1.82
LIG3P49916 Y_RNA.464-201ENST00000384282 110 ntBASIC3.71□□□□□ -1.82
LIG3P49916 MIR670-201ENST00000390142 98 ntBASIC3.71□□□□□ -1.82
LIG3P49916 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
LIG3P49916 RNU6-1248P-201ENST00000391096 64 ntBASIC3.71□□□□□ -1.82
LIG3P49916 Y_RNA.597-201ENST00000410463 100 ntBASIC3.71□□□□□ -1.82
LIG3P49916 AC009963.1-201ENST00000417265 157 ntBASIC3.71□□□□□ -1.82
LIG3P49916 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.71□□□□□ -1.82
LIG3P49916 AC097463.2-201ENST00000421074 142 ntBASIC3.71□□□□□ -1.82
LIG3P49916 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.71□□□□□ -1.82
LIG3P49916 RPS27P26-201ENST00000494583 239 ntBASIC3.71□□□□□ -1.82
LIG3P49916 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
LIG3P49916 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC3.71□□□□□ -1.82
LIG3P49916 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.71□□□□□ -1.82
LIG3P49916 AC068657.1-201ENST00000520807 306 ntBASIC3.71□□□□□ -1.82
LIG3P49916 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.71□□□□□ -1.82
LIG3P49916 MIR3145-201ENST00000580727 82 ntBASIC3.71□□□□□ -1.82
LIG3P49916 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.71□□□□□ -1.82
LIG3P49916 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.71□□□□□ -1.82
LIG3P49916 AC072026.1-201ENST00000605023 201 ntBASIC3.71□□□□□ -1.82
LIG3P49916 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.71□□□□□ -1.82
LIG3P49916 AC068205.3-201ENST00000636385 468 ntBASIC3.71□□□□□ -1.82
LIG3P49916 U6.98-201ENST00000637157 84 ntBASIC3.71□□□□□ -1.82
LIG3P49916 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
LIG3P49916 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
LIG3P49916 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
LIG3P49916 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
LIG3P49916 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.71□□□□□ -1.82
LIG3P49916 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.7□□□□□ -1.82
LIG3P49916 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
LIG3P49916 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
LIG3P49916 Y_RNA.217-201ENST00000364214 105 ntBASIC3.7□□□□□ -1.82
LIG3P49916 SNORA14A-201ENST00000364773 135 ntBASIC3.7□□□□□ -1.82
LIG3P49916 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.7□□□□□ -1.82
LIG3P49916 RNU6-1199P-201ENST00000411249 104 ntBASIC3.7□□□□□ -1.82
LIG3P49916 AC004866.1-201ENST00000411748 78 ntBASIC3.7□□□□□ -1.82
LIG3P49916 AC126124.2-201ENST00000413542 321 ntBASIC3.7□□□□□ -1.82
LIG3P49916 Z98742.2-201ENST00000431564 187 ntBASIC3.7□□□□□ -1.82
LIG3P49916 NDUFB1P1-201ENST00000435191 180 ntBASIC3.7□□□□□ -1.82
LIG3P49916 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.7□□□□□ -1.82
LIG3P49916 Y_RNA.641-201ENST00000459414 105 ntBASIC3.7□□□□□ -1.82
LIG3P49916 RPL31P41-201ENST00000477967 372 ntBASIC3.7□□□□□ -1.82
LIG3P49916 AC006445.1-201ENST00000491925 405 ntBASIC3.7□□□□□ -1.82
LIG3P49916 RNU6-191P-201ENST00000516295 94 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 125.6 ms