Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PRELID3BP1-201ENST00000457142 540 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 PPP1R2P5-201ENST00000457256 603 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 RNU7-66P-201ENST00000459469 62 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 RNU6-1037P-201ENST00000459571 107 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 AC092989.1-201ENST00000481235 277 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 MTCYBP18-201ENST00000501056 747 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 AC008628.2-201ENST00000502605 298 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 AC114801.2-201ENST00000503825 781 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 PTP4A1P4-201ENST00000512479 322 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 RPL39P5-202ENST00000512505 151 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.87□□□□□ -2.11
PTPN4P29074 RNU2-44P-201ENST00000516795 194 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 AC104576.1-201ENST00000524225 88 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.87□□□□□ -2.11
PTPN4P29074 AC016256.1-201ENST00000547971 354 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 AC021231.3-201ENST00000558497 370 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.87□□□□□ -2.11
PTPN4P29074 MIR3923-201ENST00000579521 83 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 AP001836.1-201ENST00000604675 523 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 RPL17P51-201ENST00000605218 238 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.87□□□□□ -2.11
PTPN4P29074 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
PTPN4P29074 Y_RNA.99-201ENST00000363138 105 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 RNU6-944P-201ENST00000364023 107 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
PTPN4P29074 SNORA40.18-201ENST00000391200 128 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 BTF3L4P2-201ENST00000392798 346 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 MIR450B-201ENST00000401182 78 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 RNU6-373P-201ENST00000411247 98 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 EIF1P1-201ENST00000421436 341 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 AL590135.1-201ENST00000422215 156 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 AC019205.3-201ENST00000424573 156 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 AC016700.2-201ENST00000446011 156 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 SNRPGP7-201ENST00000469016 106 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.86□□□□□ -2.11
PTPN4P29074 AC015911.1-201ENST00000495111 156 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.86□□□□□ -2.11
PTPN4P29074 FAM206BP-201ENST00000510179 541 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 AC092436.3-201ENST00000511788 257 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 RNA5SP458-201ENST00000516188 119 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 RNU6-1332P-201ENST00000516666 104 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.86□□□□□ -2.11
PTPN4P29074 HSPE1P4-201ENST00000550617 308 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.86□□□□□ -2.11
PTPN4P29074 AC110588.1-201ENST00000559699 137 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 AC024614.2-201ENST00000577584 372 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.86□□□□□ -2.11
PTPN4P29074 AC100830.2-201ENST00000581636 240 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 AC068944.2-201ENST00000610373 403 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 AL359314.1-201ENST00000616913 261 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 AC090617.10-201ENST00000624308 134 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 MIR3662-201ENST00000637030 95 ntBASIC1.86□□□□□ -2.11
PTPN4P29074 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
PTPN4P29074 MTND4P23-201ENST00000447723 1363 ntBASIC1.85□□□□□ -2.11
PTPN4P29074 RNU6-214P-201ENST00000384130 107 ntBASIC1.85□□□□□ -2.11
PTPN4P29074 SNORA8-201ENST00000384574 139 ntBASIC1.85□□□□□ -2.11
PTPN4P29074 Y_RNA.530-201ENST00000384587 101 ntBASIC1.85□□□□□ -2.11
PTPN4P29074 MTCYBP2-201ENST00000407745 171 ntBASIC1.85□□□□□ -2.11
PTPN4P29074 MIR1277-201ENST00000408536 78 ntBASIC1.85□□□□□ -2.11
PTPN4P29074 RNA5SP118-201ENST00000410385 109 ntBASIC1.85□□□□□ -2.11
PTPN4P29074 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.85□□□□□ -2.11
PTPN4P29074 AL445685.2-201ENST00000422551 342 ntBASIC1.85□□□□□ -2.11
PTPN4P29074 RNA5SP57-201ENST00000459463 123 ntBASIC1.85□□□□□ -2.11
PTPN4P29074 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.85□□□□□ -2.11
PTPN4P29074 AC091874.1-201ENST00000511402 339 ntBASIC1.85□□□□□ -2.11
PTPN4P29074 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.85□□□□□ -2.11
PTPN4P29074 CYP2C61P-201ENST00000604072 290 ntBASIC1.85□□□□□ -2.11
PTPN4P29074 AC122108.2-201ENST00000611946 526 ntBASIC1.85□□□□□ -2.11
PTPN4P29074 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.84□□□□□ -2.11
PTPN4P29074 RNU6-1252P-201ENST00000363054 104 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 Y_RNA.100-201ENST00000363141 102 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 SNORD113-7-201ENST00000363762 77 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 RNU6-234P-201ENST00000365229 104 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 RNU11-3P-201ENST00000391111 133 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 Y_RNA.599-201ENST00000410489 109 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 Y_RNA.619-201ENST00000410951 90 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 EIF1AXP1-201ENST00000419267 435 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 CYCSP49-201ENST00000420810 319 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 UBE2V1P4-201ENST00000425374 344 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.84□□□□□ -2.11
PTPN4P29074 AMD1P1-201ENST00000457220 922 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 U8.21-201ENST00000459536 136 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 AC007547.1-201ENST00000462177 490 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 HMGB3P17-201ENST00000504195 649 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.84□□□□□ -2.11
PTPN4P29074 RNU6-612P-201ENST00000516909 102 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 AP005639.2-201ENST00000527592 928 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 SCOCP1-201ENST00000554676 349 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 AP003465.2-201ENST00000602571 373 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.84□□□□□ -2.11
PTPN4P29074 AL022345.1-201ENST00000607292 135 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 AC007014.2-201ENST00000615581 479 ntBASIC1.84□□□□□ -2.11
PTPN4P29074 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.84□□□□□ -2.11
PTPN4P29074 Y_RNA.157-201ENST00000363638 102 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 SNORD32B-201ENST00000364460 84 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 SNORA16.1-201ENST00000364597 132 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 SNORD48-201ENST00000364953 64 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 RNU6-128P-201ENST00000383976 107 ntBASIC1.83□□□□□ -2.12
PTPN4P29074 RNU6-26P-201ENST00000383985 107 ntBASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 191.6 ms