Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SMARCA1P28370 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SMARCA1P28370 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.1□□□□□ -1.91
SMARCA1P28370 AL359854.1-201ENST00000614203 1594 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 RNU6-212P-201ENST00000362642 104 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 Y_RNA.106-201ENST00000363189 100 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 MIR32-201ENST00000384965 70 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 MIR487A-201ENST00000385009 80 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 Y_RNA.592-201ENST00000410274 109 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 AL590135.1-201ENST00000422215 156 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 AC019205.3-201ENST00000424573 156 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 AC016700.2-201ENST00000446011 156 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 snoU13.6-201ENST00000458785 104 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 SNORD109B-201ENST00000458961 67 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 SNORD109A-201ENST00000459128 67 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 AC103975.1-201ENST00000482506 483 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 RPL23AP70-201ENST00000483361 460 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.1□□□□□ -1.91
SMARCA1P28370 AC015911.1-201ENST00000495111 156 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 AIG1P1-201ENST00000503376 148 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 RPL23AP94-201ENST00000512518 302 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 RNU5F-2P-201ENST00000516066 82 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 RNU6-475P-201ENST00000516073 104 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 RNA5SP76-201ENST00000516277 87 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 RNU6-1046P-201ENST00000516538 107 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 AC144568.1-201ENST00000520139 137 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.1□□□□□ -1.91
SMARCA1P28370 MIR4765-201ENST00000585007 77 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 AC136443.5-201ENST00000603741 370 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 AL162730.1-201ENST00000605734 292 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 AC100812.1-201ENST00000607622 580 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 AC107871.2-201ENST00000612894 502 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 AP000560.1-201ENST00000624150 1937 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.1□□□□□ -1.91
SMARCA1P28370 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SMARCA1P28370 AC009487.2-201ENST00000420969 6821 ntBASIC3.1□□□□□ -1.91
SMARCA1P28370 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
SMARCA1P28370 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SMARCA1P28370 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
SMARCA1P28370 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.09□□□□□ -1.91
SMARCA1P28370 RNU6-859P-201ENST00000362728 107 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 RNU6-461P-201ENST00000364195 107 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 SET-203ENST00000372688 801 ntTSL 2 BASIC3.09□□□□□ -1.91
SMARCA1P28370 RNU6-17P-201ENST00000384245 107 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 Y_RNA.459-201ENST00000384251 102 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 U8.10-201ENST00000384260 133 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 RNU6-18P-201ENST00000384527 107 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 SNORA69.1-201ENST00000390904 137 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 RNU6-1328P-201ENST00000410938 106 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.09□□□□□ -1.91
SMARCA1P28370 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.09□□□□□ -1.91
SMARCA1P28370 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.09□□□□□ -1.91
SMARCA1P28370 U8.22-201ENST00000459141 133 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 snoU13.14-201ENST00000459372 104 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 RPL22P13-201ENST00000493291 347 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.09□□□□□ -1.91
SMARCA1P28370 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.09□□□□□ -1.91
SMARCA1P28370 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.09□□□□□ -1.91
SMARCA1P28370 AC096725.1-201ENST00000514266 313 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 Y_RNA.706-201ENST00000516933 99 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 Y_RNA.720-201ENST00000517166 92 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 AC109329.1-201ENST00000518744 317 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 AC115990.1-201ENST00000526957 301 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.09□□□□□ -1.91
SMARCA1P28370 HSBP1P1-201ENST00000555205 166 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
SMARCA1P28370 MIR3162-201ENST00000581818 82 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
SMARCA1P28370 RMST_6.1-201ENST00000611980 203 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 AL132822.1-201ENST00000617063 513 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 MIR6852-201ENST00000621699 66 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 MIR6733-201ENST00000635723 61 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 MIR7157-201ENST00000635801 60 ntBASIC3.09□□□□□ -1.91
SMARCA1P28370 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
SMARCA1P28370 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
SMARCA1P28370 SNORD115-32-201ENST00000364079 82 ntBASIC3.08□□□□□ -1.92
SMARCA1P28370 Y_RNA.358-201ENST00000365491 99 ntBASIC3.08□□□□□ -1.92
SMARCA1P28370 MIR186-201ENST00000384988 86 ntBASIC3.08□□□□□ -1.92
SMARCA1P28370 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
SMARCA1P28370 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.08□□□□□ -1.92
SMARCA1P28370 RNU6-764P-201ENST00000516396 105 ntBASIC3.08□□□□□ -1.92
SMARCA1P28370 RPPH1-2P-201ENST00000516688 293 ntBASIC3.08□□□□□ -1.92
SMARCA1P28370 AC021231.3-201ENST00000558497 370 ntBASIC3.08□□□□□ -1.92
SMARCA1P28370 AC006600.1-201ENST00000572529 153 ntBASIC3.08□□□□□ -1.92
SMARCA1P28370 MIR4319-201ENST00000577285 85 ntBASIC3.08□□□□□ -1.92
SMARCA1P28370 MIR3616-201ENST00000584070 92 ntBASIC3.08□□□□□ -1.92
SMARCA1P28370 RPL12P50-201ENST00000603116 116 ntBASIC3.08□□□□□ -1.92
SMARCA1P28370 Z98751.3-201ENST00000604447 521 ntBASIC3.08□□□□□ -1.92
SMARCA1P28370 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.08□□□□□ -1.92
SMARCA1P28370 U2.1-201ENST00000618978 145 ntBASIC3.08□□□□□ -1.92
SMARCA1P28370 SNORD98-201ENST00000636377 67 ntBASIC3.08□□□□□ -1.92
SMARCA1P28370 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SMARCA1P28370 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
SMARCA1P28370 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.08□□□□□ -1.92
SMARCA1P28370 RNU6-450P-201ENST00000364654 107 ntBASIC3.07□□□□□ -1.92
SMARCA1P28370 RNU6-708P-201ENST00000384217 107 ntBASIC3.07□□□□□ -1.92
SMARCA1P28370 Y_RNA.557-201ENST00000384680 107 ntBASIC3.07□□□□□ -1.92
SMARCA1P28370 RNU6-823P-201ENST00000391042 103 ntBASIC3.07□□□□□ -1.92
SMARCA1P28370 AL356057.3-201ENST00000402607 340 ntBASIC3.07□□□□□ -1.92
SMARCA1P28370 AC097463.2-201ENST00000421074 142 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 254.3 ms