Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC010099.3-201ENST00000423896 409 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 MTATP6P16-201ENST00000434543 526 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 AC002486.1-201ENST00000435098 391 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 GAPDHP17-201ENST00000449858 1001 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 RPS23P5-201ENST00000495419 428 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.59□□□□□ -2.31
HLA-DMBP28068 AC112206.4-201ENST00000515142 405 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 RNU2-34P-201ENST00000516534 121 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 SNORA70.22-201ENST00000517160 124 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.59□□□□□ -2.31
HLA-DMBP28068 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.59□□□□□ -2.31
HLA-DMBP28068 MIR4653-201ENST00000585107 83 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 Z98751.3-201ENST00000604447 521 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 AC108706.1-201ENST00000611053 297 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC0.59□□□□□ -2.31
HLA-DMBP28068 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 AC138649.3-201ENST00000622154 254 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 AL445984.1-201ENST00000637834 659 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.32
HLA-DMBP28068 AC018630.2-201ENST00000534866 2403 ntBASIC0.59□□□□□ -2.32
HLA-DMBP28068 AC008163.1-202ENST00000636004 2889 ntBASIC0.59□□□□□ -2.32
HLA-DMBP28068 BX322639.1-202ENST00000423987 2213 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 RNU6-552P-201ENST00000362869 119 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 RNU6-17P-201ENST00000384245 107 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 RNU6-18P-201ENST00000384527 107 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 MIR489-201ENST00000384923 84 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 MIR100-201ENST00000385259 80 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 PIGFP2-201ENST00000421400 651 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 RAB28P5-201ENST00000427490 651 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.58□□□□□ -2.32
HLA-DMBP28068 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.58□□□□□ -2.32
HLA-DMBP28068 AL163973.1-201ENST00000484753 577 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.58□□□□□ -2.32
HLA-DMBP28068 AC016632.1-201ENST00000503994 196 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 AC116562.3-201ENST00000506136 177 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 ACA64.5-201ENST00000516207 127 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 RNU6-567P-201ENST00000516746 107 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 AC022616.3-201ENST00000523940 148 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 AC068587.5-201ENST00000528506 175 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.58□□□□□ -2.32
HLA-DMBP28068 AC018714.1-201ENST00000605028 208 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 AC105129.3-201ENST00000605455 485 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 AL121992.2-201ENST00000606262 256 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 MIR6515-201ENST00000619843 57 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 AL049777.1-201ENST00000622740 518 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 MIR6866-201ENST00000638146 69 ntBASIC0.58□□□□□ -2.32
HLA-DMBP28068 AC009541.1-201ENST00000438279 2662 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 HSBP1P2-201ENST00000299671 229 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
HLA-DMBP28068 RNU6-1200P-201ENST00000384162 107 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 AC114482.1-201ENST00000418010 247 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 AL117339.3-201ENST00000418733 162 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 AC004941.2-201ENST00000427009 228 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 HSFY7P-201ENST00000432672 318 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 USP9YP28-201ENST00000435142 589 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 HSFY8P-201ENST00000437934 318 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 GTF2IP13-201ENST00000438487 386 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 MTATP6P14-201ENST00000455189 673 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.57□□□□□ -2.32
HLA-DMBP28068 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.57□□□□□ -2.32
HLA-DMBP28068 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC0.57□□□□□ -2.32
HLA-DMBP28068 RN7SKP49-201ENST00000516675 260 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.57□□□□□ -2.32
HLA-DMBP28068 DEFB108E-201ENST00000524692 240 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 AC090517.1-201ENST00000569307 266 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 TMF1P1-201ENST00000576058 373 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 MIR5000-201ENST00000577717 103 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 MIR4999-201ENST00000585029 91 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 AC064807.4-201ENST00000607201 407 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 AC022709.1-201ENST00000615967 87 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 AC009509.4-201ENST00000619202 509 ntBASIC0.57□□□□□ -2.32
HLA-DMBP28068 RNU6-562P-201ENST00000362731 107 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 RNU5F-6P-201ENST00000362979 116 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 RNY1-201ENST00000364228 113 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 RNU6-418P-201ENST00000384035 107 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 RNU6-116P-201ENST00000384042 109 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 RNU6-906P-201ENST00000384700 70 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 SNORD12-201ENST00000391002 90 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 MIR300-201ENST00000401138 83 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 RNU2-64P-201ENST00000411315 191 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.56□□□□□ -2.32
HLA-DMBP28068 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.56□□□□□ -2.32
HLA-DMBP28068 HSPE1P13-201ENST00000451143 297 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 C1DP4-201ENST00000455429 424 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 RNU7-34P-201ENST00000459394 64 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 HMGN1P12-201ENST00000499125 195 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 AC008628.2-201ENST00000502605 298 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.56□□□□□ -2.32
HLA-DMBP28068 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
HLA-DMBP28068 SCARNA24.1-201ENST00000516465 137 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.56□□□□□ -2.32
HLA-DMBP28068 MTCO2P2-201ENST00000591258 225 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 AP000811.1-201ENST00000603803 651 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.56□□□□□ -2.32
HLA-DMBP28068 AL136221.1-201ENST00000621449 509 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 AC009878.1-201ENST00000621819 340 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 MTND5P17-201ENST00000418405 1603 ntBASIC0.56□□□□□ -2.32
HLA-DMBP28068 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
HLA-DMBP28068 RNU6-545P-201ENST00000362681 104 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 RNU4-79P-201ENST00000362764 141 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms