Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
COL5A3P25940 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 MTND4P14-201ENST00000435799 1354 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 AC018630.2-201ENST00000534866 2403 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 ZNF702P-202ENST00000434269 1966 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
COL5A3P25940 RNU6-384P-201ENST00000364900 104 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 Y_RNA.303-201ENST00000364998 94 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 Y_RNA.367-201ENST00000365544 101 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 RNU6-622P-201ENST00000384272 103 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 SNORA40.19-201ENST00000390846 128 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 AL606923.1-201ENST00000406616 190 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 RNU6-293P-201ENST00000411259 106 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 AC016831.2-201ENST00000417179 352 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.09□□□□□ -2.24
COL5A3P25940 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC1.09□□□□□ -2.24
COL5A3P25940 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.09□□□□□ -2.24
COL5A3P25940 RPS23P4-201ENST00000487908 423 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.09□□□□□ -2.24
COL5A3P25940 AC091133.4-201ENST00000511142 308 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 RNU1-86P-201ENST00000516108 154 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 RNU1-107P-201ENST00000516617 154 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 RNU7-193P-201ENST00000516723 65 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 RNU6-430P-201ENST00000517078 107 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 AC104383.1-201ENST00000530297 370 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.09□□□□□ -2.24
COL5A3P25940 MIR4703-201ENST00000577728 79 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 SNORD14A-201ENST00000606526 91 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 HULC.1-201ENST00000612720 240 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 U4atac.1-201ENST00000618345 95 ntBASIC1.09□□□□□ -2.24
COL5A3P25940 SNORD114-19-201ENST00000363072 75 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 RNU6-527P-201ENST00000363425 104 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 SNORD14B-201ENST00000364533 90 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 Y_RNA.390-201ENST00000383932 102 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 RNU6-483P-201ENST00000384088 108 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 RNU6-1127P-201ENST00000384580 107 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 MIR218-1-201ENST00000384999 110 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 RNU6-332P-201ENST00000391193 108 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 RNU4-55P-201ENST00000410731 137 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.08□□□□□ -2.24
COL5A3P25940 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.08□□□□□ -2.24
COL5A3P25940 MTCO1P21-201ENST00000416634 589 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
COL5A3P25940 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.08□□□□□ -2.24
COL5A3P25940 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.08□□□□□ -2.24
COL5A3P25940 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
COL5A3P25940 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC1.08□□□□□ -2.24
COL5A3P25940 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.08□□□□□ -2.24
COL5A3P25940 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.08□□□□□ -2.24
COL5A3P25940 GMFBP1-201ENST00000467831 427 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 RPL7P43-201ENST00000478876 753 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.08□□□□□ -2.24
COL5A3P25940 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.08□□□□□ -2.24
COL5A3P25940 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 RNU6-970P-201ENST00000516312 107 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 RNU6-685P-201ENST00000517088 95 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.08□□□□□ -2.24
COL5A3P25940 AC025678.1-201ENST00000567861 338 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.08□□□□□ -2.24
COL5A3P25940 AC064807.4-201ENST00000607201 407 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 MIR8087-201ENST00000612745 78 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 AC024581.2-201ENST00000619986 252 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.08□□□□□ -2.24
COL5A3P25940 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
COL5A3P25940 HAUS6P2-201ENST00000433254 2404 ntBASIC1.08□□□□□ -2.24
COL5A3P25940 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.07□□□□□ -2.24
COL5A3P25940 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
COL5A3P25940 AC138393.1-203ENST00000327086 343 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 Y_RNA.518-201ENST00000384552 113 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.07□□□□□ -2.24
COL5A3P25940 AL353193.1-201ENST00000421444 268 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC1.07□□□□□ -2.24
COL5A3P25940 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.07□□□□□ -2.24
COL5A3P25940 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC1.07□□□□□ -2.24
COL5A3P25940 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC1.07□□□□□ -2.24
COL5A3P25940 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC1.07□□□□□ -2.24
COL5A3P25940 AC092001.1-201ENST00000453012 261 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 RNU7-63P-201ENST00000459054 62 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 AL163973.1-201ENST00000484753 577 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.07□□□□□ -2.24
COL5A3P25940 HMGB1P29-201ENST00000505659 499 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.07□□□□□ -2.24
COL5A3P25940 AP001893.2-201ENST00000526949 202 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 AP003034.1-201ENST00000534621 422 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.07□□□□□ -2.24
COL5A3P25940 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.07□□□□□ -2.24
COL5A3P25940 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC1.07□□□□□ -2.24
COL5A3P25940 MIR3941-201ENST00000582572 103 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 AC008752.3-201ENST00000588113 712 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 AL162413.1-201ENST00000603198 110 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 AC091152.3-201ENST00000604227 325 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 AL138963.2-201ENST00000605137 226 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 PRR13P7-201ENST00000605538 430 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 AC109347.2-201ENST00000610220 349 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 MIR6134-201ENST00000617606 109 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 AC073534.2-201ENST00000620377 381 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 AC007792.1-201ENST00000623023 402 ntBASIC1.07□□□□□ -2.24
COL5A3P25940 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC1.07□□□□□ -2.24
COL5A3P25940 OR4G2P-201ENST00000328113 903 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 RNU6-623P-201ENST00000363143 105 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms