Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 MIR5694-201ENST00000581190 76 ntBASIC2.47□□□□□ -2.01
HOXC11O43248 MIR4801-201ENST00000582704 82 ntBASIC2.47□□□□□ -2.01
HOXC11O43248 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.47□□□□□ -2.01
HOXC11O43248 AC022202.1-201ENST00000613515 211 ntBASIC2.47□□□□□ -2.01
HOXC11O43248 Z82195.2-201ENST00000612348 18351 ntBASIC2.47□□□□□ -2.01
HOXC11O43248 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HOXC11O43248 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
HOXC11O43248 U8.2-201ENST00000363156 134 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 RNU4-9P-201ENST00000364951 139 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 RNU6-596P-201ENST00000365395 98 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.46□□□□□ -2.02
HOXC11O43248 SNORD23.1-201ENST00000408212 104 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 MIR320B2-201ENST00000408479 138 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 RNA5SP425-201ENST00000410336 112 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 RPS26P42-201ENST00000413485 326 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 USP9YP30-201ENST00000430729 455 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 HMGB1P18-201ENST00000438801 619 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 IPO7P1-201ENST00000442031 636 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 OR2AQ1P-201ENST00000451972 200 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.46□□□□□ -2.02
HOXC11O43248 AC079354.2-201ENST00000453523 154 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 AF186996.7-201ENST00000492781 209 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 RNU6-1016P-201ENST00000516689 94 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 RNU7-193P-201ENST00000516723 65 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 SNORA20.3-201ENST00000516880 132 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 RNA5SP490-201ENST00000517141 136 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.46□□□□□ -2.02
HOXC11O43248 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXC11O43248 AC233702.2-202ENST00000562547 291 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 AC078899.2-201ENST00000595282 212 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 AC046143.2-201ENST00000609789 160 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXC11O43248 AC022306.2-201ENST00000617563 647 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 SCARNA4-201ENST00000629045 128 ntBASIC2.46□□□□□ -2.02
HOXC11O43248 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HOXC11O43248 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXC11O43248 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
HOXC11O43248 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HOXC11O43248 SNORD115-3-201ENST00000363100 82 ntBASIC2.45□□□□□ -2.02
HOXC11O43248 RNU6-1283P-201ENST00000365314 105 ntBASIC2.45□□□□□ -2.02
HOXC11O43248 SNORA41-201ENST00000384675 132 ntBASIC2.45□□□□□ -2.02
HOXC11O43248 SNORA80E-201ENST00000384744 137 ntBASIC2.45□□□□□ -2.02
HOXC11O43248 MIR29C-201ENST00000385231 88 ntBASIC2.45□□□□□ -2.02
HOXC11O43248 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.45□□□□□ -2.02
HOXC11O43248 RNU2-41P-201ENST00000410991 178 ntBASIC2.45□□□□□ -2.02
HOXC11O43248 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXC11O43248 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.45□□□□□ -2.02
HOXC11O43248 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXC11O43248 FO393415.2-201ENST00000480085 343 ntBASIC2.45□□□□□ -2.02
HOXC11O43248 RPS23P5-201ENST00000495419 428 ntBASIC2.45□□□□□ -2.02
HOXC11O43248 AC116353.2-201ENST00000505332 712 ntBASIC2.45□□□□□ -2.02
HOXC11O43248 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXC11O43248 AC093259.1-201ENST00000509755 300 ntBASIC2.45□□□□□ -2.02
HOXC11O43248 AC026436.1-201ENST00000510537 270 ntBASIC2.45□□□□□ -2.02
HOXC11O43248 RNU6-991P-201ENST00000516168 107 ntBASIC2.45□□□□□ -2.02
HOXC11O43248 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXC11O43248 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXC11O43248 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXC11O43248 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.45□□□□□ -2.02
HOXC11O43248 WT1-AS_8.1-201ENST00000615200 275 ntBASIC2.45□□□□□ -2.02
HOXC11O43248 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
HOXC11O43248 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.45□□□□□ -2.02
HOXC11O43248 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.44□□□□□ -2.02
HOXC11O43248 RNU6-438P-201ENST00000365561 103 ntBASIC2.44□□□□□ -2.02
HOXC11O43248 RNU6-1026P-201ENST00000384465 108 ntBASIC2.44□□□□□ -2.02
HOXC11O43248 RNU6-601P-201ENST00000384540 107 ntBASIC2.44□□□□□ -2.02
HOXC11O43248 AL355497.1-201ENST00000406262 551 ntBASIC2.44□□□□□ -2.02
HOXC11O43248 RN7SKP223-201ENST00000410582 62 ntBASIC2.44□□□□□ -2.02
HOXC11O43248 AL358453.1-201ENST00000422522 250 ntBASIC2.44□□□□□ -2.02
HOXC11O43248 SNORD5.1-201ENST00000458800 75 ntBASIC2.44□□□□□ -2.02
HOXC11O43248 AC103851.1-201ENST00000506833 274 ntBASIC2.44□□□□□ -2.02
HOXC11O43248 AC107222.1-201ENST00000510899 637 ntBASIC2.44□□□□□ -2.02
HOXC11O43248 RNA5SP281-201ENST00000516504 135 ntBASIC2.44□□□□□ -2.02
HOXC11O43248 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.44□□□□□ -2.02
HOXC11O43248 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.44□□□□□ -2.02
HOXC11O43248 MIR4529-201ENST00000578110 78 ntBASIC2.44□□□□□ -2.02
HOXC11O43248 AC243960.4-201ENST00000600532 288 ntBASIC2.44□□□□□ -2.02
HOXC11O43248 AC025754.2-201ENST00000606491 432 ntBASIC2.44□□□□□ -2.02
HOXC11O43248 AC067747.1-201ENST00000608026 250 ntBASIC2.44□□□□□ -2.02
HOXC11O43248 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.44□□□□□ -2.02
HOXC11O43248 AC099654.5-201ENST00000636479 350 ntBASIC2.44□□□□□ -2.02
HOXC11O43248 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.43□□□□□ -2.02
HOXC11O43248 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.43□□□□□ -2.02
HOXC11O43248 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.43□□□□□ -2.02
HOXC11O43248 Y_RNA.482-201ENST00000384377 111 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 SNORD14D-201ENST00000384390 87 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 MIR144-201ENST00000384886 86 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 RNU6-174P-201ENST00000410406 106 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.43□□□□□ -2.02
HOXC11O43248 AC027124.2-201ENST00000428249 105 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 HMGN2P18-201ENST00000450680 270 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 RNU7-14P-201ENST00000459331 62 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 YWHAEP4-201ENST00000505390 198 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.43□□□□□ -2.02
HOXC11O43248 ANP32BP3-201ENST00000559213 706 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 AC026470.2-201ENST00000561492 181 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 AC007336.1-201ENST00000576365 3828 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 MIR1273D-201ENST00000577266 86 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 AC018462.2-201ENST00000605375 395 ntBASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms