Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 Y_RNA.132-201ENST00000363421 102 ntBASIC1.58□□□□□ -2.16
CLDN3O15551 SNORA75-201ENST00000384158 137 ntBASIC1.58□□□□□ -2.16
CLDN3O15551 RNU6-997P-201ENST00000384725 107 ntBASIC1.58□□□□□ -2.16
CLDN3O15551 RNU6-1093P-201ENST00000391194 107 ntBASIC1.58□□□□□ -2.16
CLDN3O15551 BTF3P4-201ENST00000418852 495 ntBASIC1.58□□□□□ -2.16
CLDN3O15551 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.58□□□□□ -2.16
CLDN3O15551 snoU13.9-201ENST00000458927 103 ntBASIC1.58□□□□□ -2.16
CLDN3O15551 RNU1-98P-201ENST00000458992 160 ntBASIC1.58□□□□□ -2.16
CLDN3O15551 AC007547.1-201ENST00000462177 490 ntBASIC1.58□□□□□ -2.16
CLDN3O15551 AC087477.1-201ENST00000465747 340 ntBASIC1.58□□□□□ -2.16
CLDN3O15551 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.58□□□□□ -2.16
CLDN3O15551 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.58□□□□□ -2.16
CLDN3O15551 SNORA14.1-201ENST00000516113 141 ntBASIC1.58□□□□□ -2.16
CLDN3O15551 RNU6-612P-201ENST00000516909 102 ntBASIC1.58□□□□□ -2.16
CLDN3O15551 AP005136.1-201ENST00000579765 429 ntBASIC1.58□□□□□ -2.16
CLDN3O15551 RPL17P51-201ENST00000605218 238 ntBASIC1.58□□□□□ -2.16
CLDN3O15551 AC009994.1-201ENST00000606889 253 ntBASIC1.58□□□□□ -2.16
CLDN3O15551 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.58□□□□□ -2.16
CLDN3O15551 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.58□□□□□ -2.16
CLDN3O15551 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.58□□□□□ -2.16
CLDN3O15551 MTND5P10-201ENST00000603719 1809 ntBASIC1.58□□□□□ -2.16
CLDN3O15551 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.58□□□□□ -2.16
CLDN3O15551 Y_RNA.255-201ENST00000364581 97 ntBASIC1.57□□□□□ -2.16
CLDN3O15551 RNU6-1158P-201ENST00000391167 107 ntBASIC1.57□□□□□ -2.16
CLDN3O15551 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.57□□□□□ -2.16
CLDN3O15551 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.57□□□□□ -2.16
CLDN3O15551 AL603825.1-201ENST00000438481 80 ntBASIC1.57□□□□□ -2.16
CLDN3O15551 AC007395.1-201ENST00000451333 677 ntBASIC1.57□□□□□ -2.16
CLDN3O15551 ATP5J2P3-201ENST00000451550 258 ntBASIC1.57□□□□□ -2.16
CLDN3O15551 MTCO2P18-201ENST00000457151 658 ntBASIC1.57□□□□□ -2.16
CLDN3O15551 AC016925.1-201ENST00000458303 298 ntBASIC1.57□□□□□ -2.16
CLDN3O15551 RN7SKP210-201ENST00000459176 261 ntBASIC1.57□□□□□ -2.16
CLDN3O15551 RNU6-1037P-201ENST00000459571 107 ntBASIC1.57□□□□□ -2.16
CLDN3O15551 RPL9P9-202ENST00000466501 579 ntBASIC1.57□□□□□ -2.16
CLDN3O15551 AC096745.1-201ENST00000509945 370 ntBASIC1.57□□□□□ -2.16
CLDN3O15551 AC005520.5-201ENST00000613926 164 ntBASIC1.57□□□□□ -2.16
CLDN3O15551 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.57□□□□□ -2.16
CLDN3O15551 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
CLDN3O15551 ZNF209P-201ENST00000593450 2304 ntBASIC1.57□□□□□ -2.16
CLDN3O15551 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.56□□□□□ -2.16
CLDN3O15551 Y_RNA.1-201ENST00000352915 104 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 U8.1-201ENST00000362843 134 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 RNU1-76P-201ENST00000362903 159 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 SNORA18.2-201ENST00000383865 132 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 RNU6-1103P-201ENST00000384150 107 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 MIR1267-201ENST00000408723 78 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 RNU2-7P-201ENST00000410794 178 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 AP1B1P2-201ENST00000416196 106 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 AC007098.1-201ENST00000420122 367 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 AL353193.1-201ENST00000421444 268 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 MTCO2P19-201ENST00000427513 598 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC1.56□□□□□ -2.16
CLDN3O15551 USP9YP28-201ENST00000435142 589 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 SNRPGP13-201ENST00000442212 177 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 snoU13.6-201ENST00000458785 104 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 RNU7-95P-201ENST00000459222 64 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
CLDN3O15551 RNU6-189P-201ENST00000516120 101 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 AL161670.1-201ENST00000554348 137 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 DNAJC19P9-201ENST00000555084 351 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 SNORA59B-202ENST00000578183 701 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 AC119751.7-201ENST00000600494 245 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 AC069114.2-201ENST00000604699 304 ntBASIC1.56□□□□□ -2.16
CLDN3O15551 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.55□□□□□ -2.16
CLDN3O15551 ELL2P3-201ENST00000457883 1602 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 Y_RNA.67-201ENST00000362870 100 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 RNU6-877P-201ENST00000383868 107 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 SNORD116-8-201ENST00000384365 95 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 RNU6-296P-201ENST00000384608 107 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.55□□□□□ -2.16
CLDN3O15551 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC1.55□□□□□ -2.16
CLDN3O15551 EBAG9P1-201ENST00000418955 543 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 AC090960.1-201ENST00000421072 306 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 AL606489.2-201ENST00000433886 234 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 HSPE1P24-201ENST00000450782 238 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.55□□□□□ -2.16
CLDN3O15551 TPTE2P5-203ENST00000458118 728 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 AC010531.2-201ENST00000465012 153 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.55□□□□□ -2.16
CLDN3O15551 RPL36AP21-201ENST00000490372 323 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.55□□□□□ -2.16
CLDN3O15551 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.55□□□□□ -2.16
CLDN3O15551 RNU6-1038P-201ENST00000516516 104 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 SNORD60.2-201ENST00000516883 86 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 RNU1-92P-201ENST00000517017 135 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.55□□□□□ -2.16
CLDN3O15551 AC087683.1-201ENST00000591187 441 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
CLDN3O15551 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.55□□□□□ -2.16
CLDN3O15551 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC1.55□□□□□ -2.16
CLDN3O15551 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.55□□□□□ -2.16
CLDN3O15551 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
CLDN3O15551 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
CLDN3O15551 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
CLDN3O15551 RNU6-862P-201ENST00000362804 105 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 RNU6-227P-201ENST00000362865 103 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 MIR520A-201ENST00000384862 85 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 MTND3P9-201ENST00000429526 346 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms