Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 AC009969.1-201ENST00000438726 172 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 AC016700.2-201ENST00000446011 156 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 AC112771.1-201ENST00000463581 102 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 AC015911.1-201ENST00000495111 156 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 AC021146.2-201ENST00000504736 556 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 RNU6-327P-201ENST00000516270 127 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 RNU6-1045P-201ENST00000516321 107 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 RNU6-911P-201ENST00000516523 104 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 RN7SKP282-201ENST00000516824 299 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 AC073410.2-201ENST00000603240 332 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 AL078605.1-201ENST00000603529 500 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 SNORD58B-201ENST00000607313 66 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 AC243829.7-201ENST00000633081 225 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 MTND4P1-201ENST00000457501 1466 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 RNU6-874P-201ENST00000362390 105 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 RNU6-212P-201ENST00000362642 104 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 Y_RNA.145-201ENST00000363527 102 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 SNORA69.1-201ENST00000390904 137 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 RPS26P42-201ENST00000413485 326 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 MTND2P23-201ENST00000422990 651 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 CHEK2P4-201ENST00000450340 246 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 AC112492.4-201ENST00000456549 352 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 RPS29P12-201ENST00000460178 152 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 RN7SL283P-201ENST00000489055 303 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 HMGB1P35-201ENST00000503360 598 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 SEM1P1-201ENST00000506694 209 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 SNORA40.14-201ENST00000516543 86 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 MIR4680-201ENST00000580906 66 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 MIR4635-201ENST00000583759 79 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 MIR4765-201ENST00000585007 77 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 SNORD98-201ENST00000636377 67 ntBASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
PCDHA1Q9Y5I3 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 AL161431.1-201ENST00000618966 4205 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 RNU6-137P-201ENST00000363680 108 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 U3.13-201ENST00000364804 214 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 SNORA51.4-201ENST00000364993 124 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 SNORA36A-201ENST00000384221 132 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 MIR153-2-201ENST00000385225 87 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 MIR181B1-201ENST00000385240 110 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 Y_RNA.645-201ENST00000391229 102 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 Y_RNA.605-201ENST00000410577 105 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 MICF-203ENST00000432679 129 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 OR2AQ1P-201ENST00000451972 200 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 AL353752.1-201ENST00000454946 260 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 RNA5SP112-201ENST00000515937 99 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 SNORA31.16-201ENST00000516773 139 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 RNU6-1137P-201ENST00000517073 99 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 VN1R91P-201ENST00000594377 169 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 Z98751.3-201ENST00000604447 521 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 AC008264.2-201ENST00000610193 3731 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 AC010329.5-201ENST00000623497 2174 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 Z75746.1-201ENST00000440243 2080 ntBASIC3.04□□□□□ -1.92
PCDHA1Q9Y5I3 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 OR56A5-201ENST00000340110 738 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 RNU6-655P-201ENST00000362858 107 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 RNU6-1159P-201ENST00000362933 107 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 RNU6-1210P-201ENST00000363775 107 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 SNORA68.1-201ENST00000364537 132 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 RNU4-56P-201ENST00000364700 142 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 U8.10-201ENST00000384260 133 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 MIR32-201ENST00000384965 70 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 CBX3P9-201ENST00000402326 552 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 RNU6-985P-201ENST00000410182 104 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 Y_RNA.592-201ENST00000410274 109 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 EIF4EP4-201ENST00000424916 578 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 AL121594.1-201ENST00000475906 575 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 MIR2355-201ENST00000517199 87 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 Y_RNA.721-201ENST00000517207 102 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 SNORA31.26-201ENST00000517250 137 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 AC016727.2-201ENST00000603988 621 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 AC104695.3-201ENST00000604052 296 ntBASIC3.03□□□□□ -1.92
PCDHA1Q9Y5I3 AC005520.5-201ENST00000613926 164 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 177.4 ms