Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC009969.1-201ENST00000438726 172 ntBASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 AC009238.1-201ENST00000442165 424 ntBASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 AC009237.6-201ENST00000446969 424 ntBASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 snoU13.26-201ENST00000459452 105 ntBASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 AC117440.1-201ENST00000474107 571 ntBASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 AC132942.1-201ENST00000486753 483 ntBASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 HMGN1P13-201ENST00000505795 138 ntBASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 Y_RNA.319-201ENST00000365138 92 ntBASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 RNU6-17P-201ENST00000384245 107 ntBASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 U8.10-201ENST00000384260 133 ntBASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 RNU6-18P-201ENST00000384527 107 ntBASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 MIR2053-201ENST00000459295 91 ntBASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 AL160413.1-201ENST00000622780 310 ntBASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
CCDC9Q9Y3X0 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC9Q9Y3X0 AL355596.1-201ENST00000565399 3996 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 RNU6-490P-201ENST00000362985 107 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 RNU6-99P-201ENST00000364721 107 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 U8.9-201ENST00000365667 134 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 RNU1-109P-201ENST00000383960 147 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 Y_RNA.419-201ENST00000384041 102 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 RNU6-1011P-201ENST00000384668 107 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 RPS20P15-201ENST00000412792 311 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC4□□□□□ -1.77
CCDC9Q9Y3X0 ARL5AP4-201ENST00000430731 512 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC4□□□□□ -1.77
CCDC9Q9Y3X0 KRTAP13-6P-201ENST00000508999 371 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 RNU6-120P-201ENST00000516077 103 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 RNU6-965P-201ENST00000516721 96 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 RNA5SP54-201ENST00000516951 92 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 AC022616.8-201ENST00000533569 253 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 SUB1P3-201ENST00000564581 315 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC4□□□□□ -1.77
CCDC9Q9Y3X0 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4□□□□□ -1.77
CCDC9Q9Y3X0 AL355802.3-201ENST00000607571 545 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 AL590808.1-201ENST00000618696 141 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 AC243829.7-201ENST00000633081 225 ntBASIC4□□□□□ -1.77
CCDC9Q9Y3X0 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC9Q9Y3X0 XGY1-201ENST00000381172 446 ntBASIC3.99□□□□□ -1.77
CCDC9Q9Y3X0 RNU6-26P-201ENST00000383985 107 ntBASIC3.99□□□□□ -1.77
CCDC9Q9Y3X0 Y_RNA.577-201ENST00000384794 101 ntBASIC3.99□□□□□ -1.77
CCDC9Q9Y3X0 RPL19P1-201ENST00000411635 428 ntBASIC3.99□□□□□ -1.77
CCDC9Q9Y3X0 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC9Q9Y3X0 ANXA2P1-201ENST00000505539 926 ntBASIC3.99□□□□□ -1.77
CCDC9Q9Y3X0 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC9Q9Y3X0 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
CCDC9Q9Y3X0 AC026470.2-201ENST00000561492 181 ntBASIC3.99□□□□□ -1.77
CCDC9Q9Y3X0 AL356575.1-201ENST00000603008 283 ntBASIC3.99□□□□□ -1.77
CCDC9Q9Y3X0 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
CCDC9Q9Y3X0 AC006026.1-201ENST00000444025 1803 ntBASIC3.99□□□□□ -1.77
CCDC9Q9Y3X0 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC9Q9Y3X0 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 MIR625-201ENST00000385047 85 ntBASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 MIR190B-201ENST00000401119 79 ntBASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 MTND1P14-201ENST00000427400 950 ntBASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 AC027575.1-201ENST00000481064 460 ntBASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 AC103975.1-201ENST00000482506 483 ntBASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 MIR4658-201ENST00000584344 65 ntBASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 MIR4506-201ENST00000584693 77 ntBASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 AC016727.2-201ENST00000603988 621 ntBASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 SNRPGP20-201ENST00000604477 205 ntBASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 RPL17P51-201ENST00000605218 238 ntBASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC9Q9Y3X0 RNU4-76P-201ENST00000364509 141 ntBASIC3.97□□□□□ -1.77
CCDC9Q9Y3X0 RPS4XP2-201ENST00000458402 793 ntBASIC3.97□□□□□ -1.77
CCDC9Q9Y3X0 RNU7-87P-201ENST00000459343 62 ntBASIC3.97□□□□□ -1.77
CCDC9Q9Y3X0 AC007215.1-201ENST00000464893 276 ntBASIC3.97□□□□□ -1.77
CCDC9Q9Y3X0 RNA5SP380-201ENST00000517190 98 ntBASIC3.97□□□□□ -1.77
CCDC9Q9Y3X0 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC9Q9Y3X0 MIR1244-1-201ENST00000612829 85 ntBASIC3.97□□□□□ -1.77
CCDC9Q9Y3X0 AC005562.2-201ENST00000618264 111 ntBASIC3.97□□□□□ -1.77
CCDC9Q9Y3X0 MIR1244-3-201ENST00000635744 85 ntBASIC3.97□□□□□ -1.77
CCDC9Q9Y3X0 MIR1244-2-201ENST00000636449 85 ntBASIC3.97□□□□□ -1.77
CCDC9Q9Y3X0 MIR1244-4-202ENST00000636813 85 ntBASIC3.97□□□□□ -1.77
CCDC9Q9Y3X0 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC9Q9Y3X0 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.96□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms