Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.43□□□□□ -2.02
LIMA1Q9UHB6 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.43□□□□□ -2.02
LIMA1Q9UHB6 AL359697.1-201ENST00000624879 587 ntBASIC2.43□□□□□ -2.02
LIMA1Q9UHB6 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
LIMA1Q9UHB6 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.43□□□□□ -2.02
LIMA1Q9UHB6 AC080100.1-201ENST00000624239 5356 ntBASIC2.43□□□□□ -2.02
LIMA1Q9UHB6 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
LIMA1Q9UHB6 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.43□□□□□ -2.02
LIMA1Q9UHB6 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 SNORD32B-201ENST00000364460 84 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 RNU1-91P-201ENST00000364746 163 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 SNORA29-201ENST00000384183 140 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 MIR144-201ENST00000384886 86 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 SNORA12-201ENST00000391162 147 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 AC012306.1-201ENST00000423267 114 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 MTND4P17-201ENST00000470444 350 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 MTND5P5-201ENST00000503764 376 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 FGF7P4-201ENST00000509595 295 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 SNORA4.4-201ENST00000515921 135 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 ACA59.1-201ENST00000515966 143 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 RNU6-965P-201ENST00000516721 96 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 RNU6-667P-201ENST00000517186 102 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 AC034114.1-201ENST00000520293 285 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 MRPS36P4-201ENST00000534436 298 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 MYL12BP1-201ENST00000569826 507 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 uc_338.5-201ENST00000611839 155 ntBASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.42□□□□□ -2.02
LIMA1Q9UHB6 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.41□□□□□ -2.02
LIMA1Q9UHB6 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
LIMA1Q9UHB6 RNU6-797P-201ENST00000363101 109 ntBASIC2.41□□□□□ -2.02
LIMA1Q9UHB6 Y_RNA.339-201ENST00000365325 102 ntBASIC2.41□□□□□ -2.02
LIMA1Q9UHB6 Y_RNA.509-201ENST00000384506 99 ntBASIC2.41□□□□□ -2.02
LIMA1Q9UHB6 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.41□□□□□ -2.02
LIMA1Q9UHB6 AL139109.1-201ENST00000455491 297 ntBASIC2.41□□□□□ -2.02
LIMA1Q9UHB6 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.41□□□□□ -2.02
LIMA1Q9UHB6 RNU1-54P-201ENST00000517181 120 ntBASIC2.41□□□□□ -2.02
LIMA1Q9UHB6 AC093027.1-201ENST00000546698 429 ntBASIC2.41□□□□□ -2.02
LIMA1Q9UHB6 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.41□□□□□ -2.02
LIMA1Q9UHB6 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
LIMA1Q9UHB6 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
LIMA1Q9UHB6 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
LIMA1Q9UHB6 Y_RNA.61-201ENST00000362835 102 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 SNORD50.1-201ENST00000362987 71 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 RNU5B-2P-201ENST00000363036 113 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 RNU4-73P-201ENST00000363164 141 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 SNORA67.4-201ENST00000384688 142 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 MIR221-201ENST00000385135 110 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 MIR208B-201ENST00000401172 77 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 MIR548K-201ENST00000408406 116 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 MIR548F5-201ENST00000408421 86 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 RNU2-48P-201ENST00000410694 191 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 AC093019.1-201ENST00000443135 252 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 AC011753.1-201ENST00000451001 220 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 snoU13.6-201ENST00000458785 104 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 AL049873.1-201ENST00000480540 376 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 MTND3P22-201ENST00000510932 243 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 RNA5SP200-201ENST00000516360 103 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 AC005668.1-201ENST00000571142 476 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 PCGEM1.1-201ENST00000613431 131 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 MIR6128-201ENST00000615528 109 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 AL359314.1-201ENST00000616913 261 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 AC099654.5-201ENST00000636479 350 ntBASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.4□□□□□ -2.03
LIMA1Q9UHB6 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 AC233981.2-201ENST00000611524 1614 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 U3.9-201ENST00000363823 204 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 SNORA3A-201ENST00000364113 130 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 Y_RNA.356-201ENST00000365475 113 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 RNU6-378P-201ENST00000384324 107 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 SNORA48.3-201ENST00000391081 134 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 MIR1294-201ENST00000408503 142 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 RNA5SP494-201ENST00000410653 129 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 RNU4-14P-201ENST00000410858 122 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 MTND3P23-201ENST00000431980 347 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 FTH1P25-201ENST00000447665 469 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 AL353705.4-201ENST00000449661 238 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 AL513124.1-201ENST00000450410 614 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 AC079354.2-201ENST00000453523 154 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 AC116337.1-201ENST00000509680 687 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 RNA5SP281-201ENST00000516504 135 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 IGLV3-17-201ENST00000519099 244 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 NDUFA5P6-201ENST00000542110 379 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 AC121758.2-201ENST00000553271 193 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 MIR3126-201ENST00000577443 74 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.39□□□□□ -2.03
LIMA1Q9UHB6 AC005520.5-201ENST00000613926 164 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms