Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MTND1P35-201ENST00000526739 508 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.82□□□□□ -2.12
LHX3Q9UBR4 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.82□□□□□ -2.12
LHX3Q9UBR4 CYP4A27P-201ENST00000567218 190 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.82□□□□□ -2.12
LHX3Q9UBR4 BNIP3P25-201ENST00000596023 559 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 Z98751.3-201ENST00000604447 521 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.82□□□□□ -2.12
LHX3Q9UBR4 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.82□□□□□ -2.12
LHX3Q9UBR4 AC084768.2-201ENST00000622736 221 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 MTND4P23-201ENST00000447723 1363 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 AC009541.1-201ENST00000438279 2662 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 AC121333.1-201ENST00000567488 2709 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
LHX3Q9UBR4 RNU6-227P-201ENST00000362865 103 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 RNU6-451P-201ENST00000362921 107 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 U3.9-201ENST00000363823 204 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 RNU6-1164P-201ENST00000364428 107 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 RNU6-214P-201ENST00000384130 107 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 SNORA36A-201ENST00000384221 132 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 Y_RNA.516-201ENST00000384541 124 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 MIR450B-201ENST00000401182 78 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 SUMO2P12-201ENST00000405924 140 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 MIR1283-2-201ENST00000408621 87 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 RNA5SP489-201ENST00000410986 109 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 MTND3P9-201ENST00000429526 346 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.81□□□□□ -2.12
LHX3Q9UBR4 MTND3P21-201ENST00000433774 331 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 MTND2P29-201ENST00000438595 412 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 PMCHL2-203ENST00000457791 237 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 U8.21-201ENST00000459536 136 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 AC092436.3-201ENST00000511788 257 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.81□□□□□ -2.12
LHX3Q9UBR4 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.81□□□□□ -2.12
LHX3Q9UBR4 AL157687.1-201ENST00000554853 619 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 EIF1P4-201ENST00000572664 335 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.81□□□□□ -2.12
LHX3Q9UBR4 AC064807.4-201ENST00000607201 407 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 PCGEM1.1-201ENST00000613431 131 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 SNORA43.4-201ENST00000629559 138 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 AL450472.1-202ENST00000637286 180 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.81□□□□□ -2.12
LHX3Q9UBR4 KPNA2P1-201ENST00000458289 1591 ntBASIC1.81□□□□□ -2.12
LHX3Q9UBR4 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
LHX3Q9UBR4 RNU1-58P-201ENST00000362413 163 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 RNU6-1252P-201ENST00000363054 104 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 RNY3P3-201ENST00000363816 102 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 RNU6-1317P-201ENST00000364582 104 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 MIR181A1-201ENST00000385026 110 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.8□□□□□ -2.12
LHX3Q9UBR4 AL158823.1-201ENST00000418441 478 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.8□□□□□ -2.12
LHX3Q9UBR4 AL591806.2-201ENST00000433122 173 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 AL353689.1-201ENST00000438895 199 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 HMGN2P18-201ENST00000450680 270 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.8□□□□□ -2.12
LHX3Q9UBR4 AMD1P1-201ENST00000457220 922 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 RNA5SP233-201ENST00000459153 113 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.8□□□□□ -2.12
LHX3Q9UBR4 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.8□□□□□ -2.12
LHX3Q9UBR4 AC025465.4-201ENST00000513422 638 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 Y_RNA.655-201ENST00000515919 96 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 MIR514B-201ENST00000516774 80 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 RNA5SP490-201ENST00000517141 136 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.8□□□□□ -2.12
LHX3Q9UBR4 AP005660.1-201ENST00000522972 293 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 EIF4A1P12-201ENST00000551910 141 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 SCOCP1-201ENST00000554676 349 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 MIR4419B-201ENST00000577260 68 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.8□□□□□ -2.12
LHX3Q9UBR4 CTHRC1P1-201ENST00000605383 469 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 AL022345.1-201ENST00000607292 135 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 FAM157A-202ENST00000615155 405 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 AL136221.1-201ENST00000621449 509 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 MIR7843-201ENST00000622274 79 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 AL359757.2-201ENST00000624309 274 ntBASIC1.8□□□□□ -2.12
LHX3Q9UBR4 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
LHX3Q9UBR4 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.8□□□□□ -2.12
LHX3Q9UBR4 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.79□□□□□ -2.12
LHX3Q9UBR4 RNU4-12P-201ENST00000365233 139 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 Y_RNA.402-201ENST00000383972 102 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 RNU6-378P-201ENST00000384324 107 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
LHX3Q9UBR4 RNU6-332P-201ENST00000391193 108 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
LHX3Q9UBR4 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.79□□□□□ -2.12
LHX3Q9UBR4 AL358453.1-201ENST00000422522 250 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 AC012306.1-201ENST00000423267 114 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.79□□□□□ -2.12
LHX3Q9UBR4 AC114801.2-201ENST00000503825 781 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.79□□□□□ -2.12
LHX3Q9UBR4 Y_RNA.665-201ENST00000516177 98 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 AC109635.3-201ENST00000529536 185 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.79□□□□□ -2.12
LHX3Q9UBR4 TPRKBP2-201ENST00000565969 475 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.79□□□□□ -2.12
LHX3Q9UBR4 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.79□□□□□ -2.12
LHX3Q9UBR4 AC243960.4-201ENST00000600532 288 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 150.4 ms