Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 CBX3P9-201ENST00000402326 552 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 Y_RNA.595-201ENST00000410403 105 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 RNU2-25P-201ENST00000411041 191 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 HMGN2P31-201ENST00000432430 273 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 RPS3P1-201ENST00000456781 192 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.92□□□□□ -1.94
VSX1Q9NZR4 RNU6-1023P-201ENST00000516137 106 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 RNU1-143P-201ENST00000516296 146 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.92□□□□□ -1.94
VSX1Q9NZR4 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC2.92□□□□□ -1.94
VSX1Q9NZR4 MIR5695-201ENST00000579717 85 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.92□□□□□ -1.94
VSX1Q9NZR4 U1.23-201ENST00000610293 146 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 AC010999.1-201ENST00000611856 324 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 RNU1-68P-201ENST00000615382 146 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC2.92□□□□□ -1.94
VSX1Q9NZR4 U1.39-201ENST00000621562 146 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.92□□□□□ -1.94
VSX1Q9NZR4 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.92□□□□□ -1.94
VSX1Q9NZR4 AL359854.1-201ENST00000614203 1594 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 RNU1-62P-201ENST00000362599 164 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 RNA5SP119-201ENST00000362715 117 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 Y_RNA.84-201ENST00000363011 104 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 Y_RNA.143-201ENST00000363520 106 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 SNORA36A-201ENST00000384221 132 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 Y_RNA.483-201ENST00000384380 101 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 MIR186-201ENST00000384988 86 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 Y_RNA.581-201ENST00000391017 97 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 AL079342.1-201ENST00000401460 267 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 RNU6-1203P-201ENST00000410703 110 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 RPS29P4-201ENST00000414733 161 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.91□□□□□ -1.94
VSX1Q9NZR4 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.91□□□□□ -1.94
VSX1Q9NZR4 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.91□□□□□ -1.94
VSX1Q9NZR4 AIMP1P2-201ENST00000425294 312 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.91□□□□□ -1.94
VSX1Q9NZR4 AC115115.1-201ENST00000449927 248 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 AP000705.1-201ENST00000454567 350 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC2.91□□□□□ -1.94
VSX1Q9NZR4 SEPT14P8-201ENST00000508026 178 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 SNORA31.16-201ENST00000516773 139 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC2.91□□□□□ -1.94
VSX1Q9NZR4 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
VSX1Q9NZR4 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.91□□□□□ -1.94
VSX1Q9NZR4 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.91□□□□□ -1.94
VSX1Q9NZR4 MIR4276-201ENST00000584832 70 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.91□□□□□ -1.94
VSX1Q9NZR4 AL162713.1-201ENST00000604480 262 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.91□□□□□ -1.94
VSX1Q9NZR4 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.91□□□□□ -1.94
VSX1Q9NZR4 AC008264.2-201ENST00000610193 3731 ntBASIC2.91□□□□□ -1.94
VSX1Q9NZR4 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
VSX1Q9NZR4 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.9□□□□□ -1.94
VSX1Q9NZR4 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
VSX1Q9NZR4 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
VSX1Q9NZR4 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.9□□□□□ -1.95
VSX1Q9NZR4 MIR148B-201ENST00000362252 99 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 Y_RNA.179-201ENST00000363844 90 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 Y_RNA.257-201ENST00000364596 102 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 SNORA62.3-201ENST00000365110 153 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 RNU6-806P-201ENST00000365147 105 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 RNU6-1027P-201ENST00000383998 107 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 MIR208B-201ENST00000401172 77 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 RNU6-121P-201ENST00000410525 99 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 AC097463.2-201ENST00000421074 142 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 AL139281.1-201ENST00000422120 335 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.9□□□□□ -1.95
VSX1Q9NZR4 MTND4LP30-201ENST00000454092 297 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.9□□□□□ -1.95
VSX1Q9NZR4 AP001324.2-201ENST00000461163 319 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 RNA5SP217-201ENST00000515959 91 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 Y_RNA.683-201ENST00000516508 93 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.9□□□□□ -1.95
VSX1Q9NZR4 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC2.9□□□□□ -1.95
VSX1Q9NZR4 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC2.9□□□□□ -1.95
VSX1Q9NZR4 AC073657.2-201ENST00000605661 303 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 SNORD113-5-201ENST00000607261 78 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 AC069200.1-201ENST00000609511 323 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 PCGEM1.1-201ENST00000613431 131 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 AC141273.2-201ENST00000618989 130 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC2.9□□□□□ -1.95
VSX1Q9NZR4 Z83843.1-201ENST00000604070 3685 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.9□□□□□ -1.95
VSX1Q9NZR4 MTND5P6-201ENST00000422338 1798 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.89□□□□□ -1.95
VSX1Q9NZR4 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
VSX1Q9NZR4 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.89□□□□□ -1.95
VSX1Q9NZR4 AL391987.6-201ENST00000305671 199 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 RNU4-90P-201ENST00000362773 141 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 U3.9-201ENST00000363823 204 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 SNORA20.1-201ENST00000364790 130 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 AL512633.1-201ENST00000399931 655 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 RNA5SP201-201ENST00000410316 124 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 RNA5SP344-201ENST00000411081 104 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 snoU13.6-201ENST00000458785 104 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 132.4 ms