Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
EXOSC3Q9NQT5 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 SNORA70B-201ENST00000384210 135 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 MIR208B-201ENST00000401172 77 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 AL079342.1-201ENST00000401460 267 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 MTCYBP2-201ENST00000407745 171 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 RNU6-373P-201ENST00000411247 98 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 EIF1AXP1-201ENST00000419267 435 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 AL513185.2-201ENST00000425543 193 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 MTND1P4-201ENST00000435196 415 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 AC055731.1-201ENST00000474387 401 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 MTCO1P29-201ENST00000496868 288 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 AC096745.1-201ENST00000509945 370 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 AC107393.1-201ENST00000512403 346 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 RNU6-256P-201ENST00000516747 97 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 RNU6-273P-201ENST00000516937 96 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 AC021231.3-201ENST00000558497 370 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 MIR3942-201ENST00000585264 109 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 AC025754.2-201ENST00000606491 432 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 MIR3976-201ENST00000606807 139 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 AC098679.4-201ENST00000624241 654 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 AL359851.1-201ENST00000569460 4997 ntBASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.74□□□□□ -2.13
EXOSC3Q9NQT5 Y_RNA.151-201ENST00000363566 112 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 RNU6-128P-201ENST00000383976 107 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 Y_RNA.414-201ENST00000384011 101 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 RNU6-933P-201ENST00000384424 107 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 RNU6-95P-201ENST00000384697 107 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 MIR518A2-201ENST00000384966 87 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 AC019129.1-201ENST00000403786 261 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 RNA5SP201-201ENST00000410316 124 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 RNA5SP489-201ENST00000410986 109 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 RNU6-1148P-201ENST00000410992 104 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 RPS29P21-201ENST00000496272 170 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 AC093259.1-201ENST00000509755 300 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 PTP4A1P4-201ENST00000512479 322 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 MRPS36P4-201ENST00000534436 298 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 MIR3672-201ENST00000584290 82 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 AP000907.4-201ENST00000604143 237 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 PCGEM1.1-201ENST00000613431 131 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 AL138726.1-201ENST00000614873 333 ntBASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
EXOSC3Q9NQT5 Y_RNA.100-201ENST00000363141 102 ntBASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 RNU6-192P-201ENST00000391253 100 ntBASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 AL356379.1-201ENST00000414105 126 ntBASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 AC012306.1-201ENST00000423267 114 ntBASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 Z82205.1-201ENST00000428456 297 ntBASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 RPS29P25-201ENST00000481709 171 ntBASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 RNU6-1314P-201ENST00000517139 104 ntBASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 RNU2-19P-201ENST00000517288 84 ntBASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 CYP4A27P-201ENST00000567218 190 ntBASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 MIR4529-201ENST00000578110 78 ntBASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 AC023043.2-201ENST00000589678 1026 ntBASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 AC007229.1-201ENST00000590455 412 ntBASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 AP000654.2-201ENST00000605633 586 ntBASIC1.72□□□□□ -2.13
EXOSC3Q9NQT5 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 RNA5SP276-201ENST00000362580 94 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 U3.9-201ENST00000363823 204 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 Y_RNA.212-201ENST00000364177 102 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 RNU6-26P-201ENST00000383985 107 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 SNORA32.2-201ENST00000384049 122 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 SNORA29-201ENST00000384183 140 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 SNORD14D-201ENST00000384390 87 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 RNU6-790P-201ENST00000384479 105 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 RNU2-41P-201ENST00000410991 178 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 FCF1P9-201ENST00000412546 282 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 BX510359.4-201ENST00000423750 193 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 MTND1P11-201ENST00000456661 876 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 TRBV12-1-201ENST00000479785 344 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 TRBVA-201ENST00000498804 316 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 AC114801.2-201ENST00000503825 781 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 AC005741.1-201ENST00000511094 432 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 RNA5SP182-201ENST00000516064 82 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 164.2 ms