Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 AC013244.2-201ENST00000603396 103 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.9□□□□□ -2.26
VCX3AQ9NNX9 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 SNORD70.1-201ENST00000391007 85 ntBASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 SNORA26.9-201ENST00000391322 122 ntBASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 SNORA11-201ENST00000408789 128 ntBASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 AC079781.2-201ENST00000446424 169 ntBASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 RNU7-182P-201ENST00000459009 62 ntBASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 RNU7-34P-201ENST00000459394 64 ntBASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 RPS29P21-201ENST00000496272 170 ntBASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 RNU6-165P-201ENST00000517170 99 ntBASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 CYCSP23-201ENST00000519781 313 ntBASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 AC064807.4-201ENST00000607201 407 ntBASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.9□□□□□ -2.27
VCX3AQ9NNX9 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 RNU6-1214P-201ENST00000363650 109 ntBASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 Y_RNA.480-201ENST00000384364 102 ntBASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 MIR146A-201ENST00000385201 99 ntBASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 RNU6-1093P-201ENST00000391194 107 ntBASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 RNU4-46P-201ENST00000410818 138 ntBASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 GPR143P-201ENST00000434155 205 ntBASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 Z73417.1-201ENST00000447373 778 ntBASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 SNORD13-201ENST00000459299 104 ntBASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 SNORD11.1-201ENST00000459482 85 ntBASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 SCARNA1-201ENST00000517138 166 ntBASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 SNORD114-21-201ENST00000606412 72 ntBASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 AL020996.3-201ENST00000606617 222 ntBASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 SEPT14P19-203ENST00000633205 211 ntBASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.89□□□□□ -2.27
VCX3AQ9NNX9 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 RNU6-266P-201ENST00000364225 107 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 RNU6-534P-201ENST00000364877 106 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 SNORA70B-201ENST00000384210 135 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 RNU6-1127P-201ENST00000384580 107 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 MIR634-201ENST00000385208 97 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 MIR1283-1-201ENST00000408494 87 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 RNU6-584P-201ENST00000410350 95 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 RPS3AP3-201ENST00000411933 242 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 AC011233.1-201ENST00000422812 283 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 ISCA1P6-201ENST00000427740 390 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 AC016717.1-201ENST00000448918 286 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 UBL5P1-201ENST00000507979 193 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 SUMO2P16-201ENST00000519475 264 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 AP003072.2-201ENST00000527756 676 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 TPRKBP2-201ENST00000565969 475 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 AGGF1P4-201ENST00000568249 801 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 AC004223.4-201ENST00000612426 332 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 AC009509.4-201ENST00000619202 509 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 AL391516.1-201ENST00000554380 2449 ntBASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC0.88□□□□□ -2.27
VCX3AQ9NNX9 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 RNU6-562P-201ENST00000362731 107 ntBASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 RNU4-28P-201ENST00000364739 141 ntBASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 RNU6-434P-201ENST00000384376 107 ntBASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 HSPE1P13-201ENST00000451143 297 ntBASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 snoU13.6-201ENST00000458785 104 ntBASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 UBE2DNL-203ENST00000474922 222 ntBASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 HMGN1P12-201ENST00000499125 195 ntBASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 AC010486.2-201ENST00000505572 483 ntBASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 ARL2BPP4-201ENST00000506854 471 ntBASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 MTND2P32-201ENST00000521584 1038 ntBASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 MIR4703-201ENST00000577728 79 ntBASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 AC008088.1-201ENST00000580993 280 ntBASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 RSL24D1P11-201ENST00000591045 491 ntBASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC0.87□□□□□ -2.27
VCX3AQ9NNX9 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 RNU4-38P-201ENST00000364472 129 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 SNORA29-201ENST00000384183 140 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 RNA5SP109-201ENST00000391010 116 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 MIR300-201ENST00000401138 83 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 134.7 ms