Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC009541.1-201ENST00000438279 2662 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 Y_RNA.40-201ENST00000362645 93 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 Y_RNA.70-201ENST00000362886 110 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 RNU5E-4P-201ENST00000364931 120 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 SNORA70.4-201ENST00000365509 134 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-142P-201ENST00000384019 107 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 Y_RNA.474-201ENST00000384341 102 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-601P-201ENST00000384540 107 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 AL591034.2-201ENST00000402839 359 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 EIF4EP2-201ENST00000422816 654 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 AC008267.5-201ENST00000424928 265 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 AC104564.1-201ENST00000493028 407 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 HSPE1P4-201ENST00000550617 308 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 FGF7P1-201ENST00000582820 288 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 AC018462.2-201ENST00000605375 395 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 AL132765.2-201ENST00000610812 351 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 AC006386.2-201ENST00000624491 75 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 AC012005.1-201ENST00000624575 75 ntBASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 MIR208A-201ENST00000362287 71 ntBASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 MIR218-1-201ENST00000384999 110 ntBASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 RNU5F-2P-201ENST00000516066 82 ntBASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-567P-201ENST00000516746 107 ntBASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 AC021231.3-201ENST00000558497 370 ntBASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 MIR5571-201ENST00000577998 113 ntBASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 AL096840.1-201ENST00000603287 93 ntBASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 MIR3976-201ENST00000606807 139 ntBASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 Y_RNA.804-201ENST00000615262 101 ntBASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 SDR42E1P4-201ENST00000620894 481 ntBASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
CCDC28BQ9BUN5 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 RNU1-72P-201ENST00000362976 153 ntBASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-525P-201ENST00000363685 104 ntBASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 RNU4-56P-201ENST00000364700 142 ntBASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 Y_RNA.387-201ENST00000383918 102 ntBASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 MIR491-201ENST00000384877 84 ntBASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-174P-201ENST00000410406 106 ntBASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 AC022028.1-201ENST00000412054 408 ntBASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 AC236972.1-201ENST00000433225 199 ntBASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 HMGB1P35-201ENST00000503360 598 ntBASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 MTND3P22-201ENST00000510932 243 ntBASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 SNORA25.11-201ENST00000515935 105 ntBASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-277P-201ENST00000516272 106 ntBASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 Y_RNA.708-201ENST00000516950 96 ntBASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 AC007375.1-201ENST00000554513 578 ntBASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 RPL30P11-203ENST00000598995 310 ntBASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 MIR5739-201ENST00000619803 80 ntBASIC1.97□□□□□ -2.09
CCDC28BQ9BUN5 MTND5P6-201ENST00000422338 1798 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 Y_RNA.123-201ENST00000363338 102 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 U3.13-201ENST00000364804 214 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 RNU6-1286P-201ENST00000383871 107 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 Y_RNA.504-201ENST00000384481 104 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 RNU6-306P-201ENST00000384617 107 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 MIR29B2-201ENST00000385055 81 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 MIR483-201ENST00000385070 76 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 HMGN2P19-201ENST00000425149 265 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 USP9YP30-201ENST00000430729 455 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 FTH1P25-201ENST00000447665 469 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 AL513124.1-201ENST00000450410 614 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 SNRPGP7-201ENST00000469016 106 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 AC055731.1-201ENST00000474387 401 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 HMGB3P17-201ENST00000504195 649 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 AC091874.1-201ENST00000511402 339 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 AC026782.1-201ENST00000512952 449 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 EIF4BP1-201ENST00000554881 351 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms