Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC092436.3-201ENST00000511788 257 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 Y_RNA.655-201ENST00000515919 96 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 AC069113.1-201ENST00000517763 267 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 MTND1P35-201ENST00000526739 508 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 TPRKBP2-201ENST00000565969 475 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 AC010900.2-201ENST00000604508 210 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 RMST_3.1-201ENST00000611651 109 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.8□□□□□ -2.12
VPS39Q96JC1 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.8□□□□□ -2.12
VPS39Q96JC1 SNORD98-201ENST00000636377 67 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 MIR1321-201ENST00000637766 79 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 AC024614.3-201ENST00000637860 256 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 RNU6-23P-201ENST00000363283 107 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 RNU6-82P-201ENST00000363970 107 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 RNU4-42P-201ENST00000364738 142 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 MIR30A-201ENST00000385092 71 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
VPS39Q96JC1 RNU6-332P-201ENST00000391193 108 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 MIR1294-201ENST00000408503 142 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 RNU6-1245P-201ENST00000411130 106 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.79□□□□□ -2.12
VPS39Q96JC1 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.79□□□□□ -2.12
VPS39Q96JC1 AL590135.1-201ENST00000422215 156 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 AC019205.3-201ENST00000424573 156 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 AC244670.1-201ENST00000436879 112 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 SEPT14P3-201ENST00000439401 183 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 AL732372.2-207ENST00000445840 183 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 AC016700.2-201ENST00000446011 156 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 SEPT14P2-201ENST00000453405 183 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 AC015911.1-201ENST00000495111 156 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 SEPT14P4-201ENST00000513445 186 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 SNORA19.2-201ENST00000516013 114 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 RNA5SP182-201ENST00000516064 82 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 RNU6-1332P-201ENST00000516666 104 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 FO082796.1-201ENST00000523795 183 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 HSPE1P4-201ENST00000550617 308 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 EIF1P4-201ENST00000572664 335 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.79□□□□□ -2.12
VPS39Q96JC1 MIR3941-201ENST00000582572 103 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 AC078795.3-201ENST00000602913 472 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 AL162413.1-201ENST00000603198 110 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 AC130454.1-201ENST00000622948 401 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 FER-210ENST00000628534 558 ntTSL 5 BASIC1.79□□□□□ -2.12
VPS39Q96JC1 AL450472.1-202ENST00000637286 180 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 AC068137.3-201ENST00000639191 341 ntBASIC1.79□□□□□ -2.12
VPS39Q96JC1 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.79□□□□□ -2.12
VPS39Q96JC1 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.79□□□□□ -2.12
VPS39Q96JC1 Y_RNA.256-201ENST00000364594 104 ntBASIC1.78□□□□□ -2.12
VPS39Q96JC1 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.78□□□□□ -2.12
VPS39Q96JC1 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
VPS39Q96JC1 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.78□□□□□ -2.12
VPS39Q96JC1 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.78□□□□□ -2.12
VPS39Q96JC1 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.78□□□□□ -2.12
VPS39Q96JC1 ERLEC1P1-201ENST00000433806 578 ntBASIC1.78□□□□□ -2.12
VPS39Q96JC1 AC112492.4-201ENST00000456549 352 ntBASIC1.78□□□□□ -2.12
VPS39Q96JC1 AMD1P1-201ENST00000457220 922 ntBASIC1.78□□□□□ -2.12
VPS39Q96JC1 RPS29P11-201ENST00000496507 171 ntBASIC1.78□□□□□ -2.12
VPS39Q96JC1 AC008628.2-201ENST00000502605 298 ntBASIC1.78□□□□□ -2.12
VPS39Q96JC1 Y_RNA.665-201ENST00000516177 98 ntBASIC1.78□□□□□ -2.12
VPS39Q96JC1 SNORD60.2-201ENST00000516883 86 ntBASIC1.78□□□□□ -2.12
VPS39Q96JC1 TRAV32-201ENST00000553993 340 ntBASIC1.78□□□□□ -2.12
VPS39Q96JC1 AP001836.1-201ENST00000604675 523 ntBASIC1.78□□□□□ -2.12
VPS39Q96JC1 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.78□□□□□ -2.12
VPS39Q96JC1 SNORA43.4-201ENST00000629559 138 ntBASIC1.78□□□□□ -2.12
VPS39Q96JC1 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
VPS39Q96JC1 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.13
VPS39Q96JC1 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
VPS39Q96JC1 MIR126-201ENST00000362291 85 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 RNY3P3-201ENST00000363816 102 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 RNU6-1317P-201ENST00000364582 104 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 SNORD48-201ENST00000364953 64 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 RNU4-12P-201ENST00000365233 139 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
VPS39Q96JC1 RNU6-1215P-201ENST00000384441 102 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 Y_RNA.504-201ENST00000384481 104 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 MIR9-3-201ENST00000385084 90 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 AL357139.1-201ENST00000407792 426 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 MTND3P9-201ENST00000429526 346 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 MTCO2P3-201ENST00000442543 421 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.77□□□□□ -2.13
VPS39Q96JC1 HMGN2P23-201ENST00000456759 269 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 AC145146.1-201ENST00000496370 254 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 FAM206BP-201ENST00000510179 541 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 AC110588.1-201ENST00000559699 137 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.77□□□□□ -2.13
VPS39Q96JC1 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.77□□□□□ -2.13
VPS39Q96JC1 AL034555.1-201ENST00000604816 211 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 AC018889.1-201ENST00000605372 397 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.77□□□□□ -2.13
VPS39Q96JC1 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
VPS39Q96JC1 DISC2.1-201ENST00000612827 205 ntBASIC1.77□□□□□ -2.13
VPS39Q96JC1 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.77□□□□□ -2.13
VPS39Q96JC1 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.77□□□□□ -2.13
VPS39Q96JC1 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.76□□□□□ -2.13
VPS39Q96JC1 RNA5SP493-201ENST00000364115 91 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 RNU6-1141P-201ENST00000364520 107 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 RNU6-1329P-201ENST00000365664 107 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 SNORD115-47-201ENST00000391226 86 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 MIR450B-201ENST00000401182 78 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 RNA5SP100-201ENST00000410903 110 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms