Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 AL645568.3-201ENST00000433683 316 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 USP9YP28-201ENST00000435142 589 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 snoU13.6-201ENST00000458785 104 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 TOMM22P6-201ENST00000465035 409 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 AP005660.1-201ENST00000522972 293 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 MRPS36P4-201ENST00000534436 298 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 SCOCP1-201ENST00000554676 349 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 AL157687.1-201ENST00000554853 619 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 HMGB1P33-201ENST00000563485 527 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 AC025754.2-201ENST00000606491 432 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 AC009994.1-201ENST00000606889 253 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 AL357078.3-201ENST00000607528 618 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 RMST_3.1-201ENST00000611651 109 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 MIR6852-201ENST00000621699 66 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 AC121333.1-201ENST00000567488 2709 ntBASIC1.46□□□□□ -2.17
CCDC54Q8NEL0 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 RNU1-58P-201ENST00000362413 163 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 RNA5SP493-201ENST00000364115 91 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 Y_RNA.500-201ENST00000384466 111 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 MIR487A-201ENST00000385009 80 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 MIR549A-201ENST00000385268 96 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 SNORD37.1-201ENST00000390968 65 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 RNU11-3P-201ENST00000391111 133 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 AL079342.1-201ENST00000401460 267 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 RNU6-1148P-201ENST00000410992 104 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 RN7SKP284-201ENST00000411002 343 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 MTND3P9-201ENST00000429526 346 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 MTND2P29-201ENST00000438595 412 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 HMGN2P26-201ENST00000463169 339 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 AC025465.4-201ENST00000513422 638 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 SNORA19.2-201ENST00000516013 114 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 RNU6-1098P-201ENST00000516772 96 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 AC109446.1-201ENST00000566172 220 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 CPDP1-201ENST00000579660 283 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 AL356157.2-201ENST00000605122 111 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 AC005520.5-201ENST00000613926 164 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 OR4G1P-203ENST00000641984 1631 ntBASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.46□□□□□ -2.18
CCDC54Q8NEL0 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 AC092268.1-201ENST00000342691 405 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 RNU5B-2P-201ENST00000363036 113 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 Y_RNA.99-201ENST00000363138 105 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 RNU6-254P-201ENST00000363377 107 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 RNU6-26P-201ENST00000383985 107 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 RNU6-1042P-201ENST00000384204 107 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 MIR450B-201ENST00000401182 78 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 MIR934-201ENST00000401241 83 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 RNU6-325P-201ENST00000411132 105 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 AC004866.1-201ENST00000411748 78 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 MTND1P1-201ENST00000445453 368 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 RPS29P11-201ENST00000496507 171 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 RNU6-1281P-201ENST00000516223 105 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 MIR502-201ENST00000606349 86 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 AC103810.8-201ENST00000607347 118 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 AC099654.12-201ENST00000639868 649 ntBASIC1.45□□□□□ -2.18
CCDC54Q8NEL0 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 SNORD114-1-201ENST00000362705 72 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 RNY3P3-201ENST00000363816 102 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 SNORA29-201ENST00000384183 140 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 SNORA70B-201ENST00000384210 135 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 Y_RNA.481-201ENST00000384373 102 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 MIR29C-201ENST00000385231 88 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 ERLEC1P1-201ENST00000433806 578 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 AL359672.1-201ENST00000442302 409 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 RNU7-187P-201ENST00000458985 68 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 AF186996.7-201ENST00000492781 209 ntBASIC1.44□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms