Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RPL23AP95-201ENST00000426806 265 ntBASIC0.26□□□□□ -2.37
FOXA3P55318 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC0.26□□□□□ -2.37
FOXA3P55318 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC0.26□□□□□ -2.37
FOXA3P55318 AC092991.1-201ENST00000477176 376 ntBASIC0.26□□□□□ -2.37
FOXA3P55318 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.26□□□□□ -2.37
FOXA3P55318 MIR5695-201ENST00000579717 85 ntBASIC0.26□□□□□ -2.37
FOXA3P55318 AC016727.2-201ENST00000603988 621 ntBASIC0.26□□□□□ -2.37
FOXA3P55318 AC121334.2-201ENST00000605387 271 ntBASIC0.26□□□□□ -2.37
FOXA3P55318 RNU6-1192P-201ENST00000612197 107 ntBASIC0.26□□□□□ -2.37
FOXA3P55318 AC021506.2-201ENST00000612354 169 ntBASIC0.26□□□□□ -2.37
FOXA3P55318 PART1_2.1-201ENST00000612397 250 ntBASIC0.26□□□□□ -2.37
FOXA3P55318 PCGEM1.1-201ENST00000613431 131 ntBASIC0.26□□□□□ -2.37
FOXA3P55318 MIR6504-201ENST00000613520 61 ntBASIC0.26□□□□□ -2.37
FOXA3P55318 RNU6-489P-201ENST00000618289 107 ntBASIC0.26□□□□□ -2.37
FOXA3P55318 MIR338-201ENST00000636369 67 ntBASIC0.26□□□□□ -2.37
FOXA3P55318 ELL2P3-201ENST00000457883 1602 ntBASIC0.26□□□□□ -2.37
FOXA3P55318 ZNF736P9Y-201ENST00000439586 1345 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-37P-201ENST00000362692 107 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 SNORD56.2-201ENST00000363242 71 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-11P-201ENST00000364234 107 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-25P-201ENST00000383873 107 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-1-201ENST00000383898 107 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-48P-201ENST00000384161 107 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-36P-201ENST00000384172 107 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-4P-201ENST00000384205 107 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-5P-201ENST00000384238 107 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-3P-201ENST00000384314 107 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-16P-201ENST00000384385 107 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 SNORA24.1-201ENST00000384401 135 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-15P-201ENST00000384534 107 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-2-201ENST00000384627 107 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-29P-201ENST00000384637 107 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-9-201ENST00000384776 107 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-33P-201ENST00000384793 107 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RPL21P1-201ENST00000399532 476 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 AL353777.1-201ENST00000425552 326 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.25□□□□□ -2.37
FOXA3P55318 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC0.25□□□□□ -2.37
FOXA3P55318 RPS23P5-201ENST00000495419 428 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-377P-201ENST00000515965 102 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-276P-201ENST00000516114 96 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-856P-201ENST00000516959 98 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC0.25□□□□□ -2.37
FOXA3P55318 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC0.25□□□□□ -2.37
FOXA3P55318 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC0.25□□□□□ -2.37
FOXA3P55318 AC090517.1-201ENST00000569307 266 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 MIR5692A1-201ENST00000580523 69 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 AL512605.2-201ENST00000592972 256 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 AC073539.2-201ENST00000597113 165 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 AC078795.3-201ENST00000602913 472 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 Z83818.1-201ENST00000603584 150 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 AL513534.2-201ENST00000603836 250 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 AL031281.1-201ENST00000604049 488 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 RNU6-6P-201ENST00000606623 107 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 AL139286.2-201ENST00000606838 396 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 AL139022.2-201ENST00000606934 443 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 AL158211.2-201ENST00000607282 395 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.25□□□□□ -2.37
FOXA3P55318 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC0.25□□□□□ -2.37
FOXA3P55318 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.25□□□□□ -2.37
FOXA3P55318 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC0.25□□□□□ -2.37
FOXA3P55318 AL359740.1-201ENST00000624340 592 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 AL157786.1-207ENST00000627771 695 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 MIR6516-201ENST00000630554 81 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 AC006927.4-201ENST00000639187 543 ntBASIC0.25□□□□□ -2.37
FOXA3P55318 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
FOXA3P55318 RNA5SP432-201ENST00000362480 116 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 Y_RNA.110-201ENST00000363220 99 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 RNU6-1141P-201ENST00000364520 107 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 RNU6-39P-201ENST00000384344 107 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 MIR548J-201ENST00000408833 112 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC0.24□□□□□ -2.37
FOXA3P55318 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.24□□□□□ -2.37
FOXA3P55318 RPL22P18-201ENST00000417197 377 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.24□□□□□ -2.37
FOXA3P55318 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.24□□□□□ -2.37
FOXA3P55318 ZNF736P1Y-201ENST00000440402 1276 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 AL162395.1-201ENST00000457882 422 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 AC002350.1-201ENST00000490759 375 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 RPS26P48-201ENST00000491713 339 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 AC105758.1-201ENST00000506038 399 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 AC116347.2-201ENST00000514912 523 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 MTATP6P15-201ENST00000527233 835 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 EIF4A1P12-201ENST00000551910 141 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.24□□□□□ -2.37
FOXA3P55318 MIR5697-201ENST00000578045 78 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.24□□□□□ -2.37
FOXA3P55318 MIR8070-201ENST00000616510 88 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 MIR6788-201ENST00000618842 66 ntBASIC0.24□□□□□ -2.37
FOXA3P55318 BX322639.1-202ENST00000423987 2213 ntBASIC0.23□□□□□ -2.37
FOXA3P55318 RNU6-428P-201ENST00000362942 107 ntBASIC0.23□□□□□ -2.37
FOXA3P55318 Y_RNA.191-201ENST00000363972 113 ntBASIC0.23□□□□□ -2.37
FOXA3P55318 RNU6-950P-201ENST00000384651 107 ntBASIC0.23□□□□□ -2.37
FOXA3P55318 RNU2-3P-201ENST00000410144 191 ntBASIC0.23□□□□□ -2.37
FOXA3P55318 AL035398.1-201ENST00000430869 322 ntBASIC0.23□□□□□ -2.37
FOXA3P55318 USP9YP28-201ENST00000435142 589 ntBASIC0.23□□□□□ -2.37
FOXA3P55318 FABP5P4-201ENST00000437203 171 ntBASIC0.23□□□□□ -2.37
FOXA3P55318 RPL22P17-201ENST00000438729 315 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms