Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.16□□□□□ -2.06
LHX1P48742 CBX3P6-201ENST00000430257 527 ntBASIC2.16□□□□□ -2.06
LHX1P48742 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.16□□□□□ -2.06
LHX1P48742 UBL5P3-201ENST00000475112 231 ntBASIC2.16□□□□□ -2.06
LHX1P48742 RNU6-965P-201ENST00000516721 96 ntBASIC2.16□□□□□ -2.06
LHX1P48742 RNU6-667P-201ENST00000517186 102 ntBASIC2.16□□□□□ -2.06
LHX1P48742 AC022616.8-201ENST00000533569 253 ntBASIC2.16□□□□□ -2.06
LHX1P48742 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.16□□□□□ -2.06
LHX1P48742 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.16□□□□□ -2.06
LHX1P48742 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.16□□□□□ -2.06
LHX1P48742 U2.15-201ENST00000611544 191 ntBASIC2.16□□□□□ -2.06
LHX1P48742 U2.16-201ENST00000613119 191 ntBASIC2.16□□□□□ -2.06
LHX1P48742 Y_RNA.783-201ENST00000613546 102 ntBASIC2.16□□□□□ -2.06
LHX1P48742 U2.12-201ENST00000613778 191 ntBASIC2.16□□□□□ -2.06
LHX1P48742 U2.20-201ENST00000613956 192 ntBASIC2.16□□□□□ -2.06
LHX1P48742 U2.9-201ENST00000615427 191 ntBASIC2.16□□□□□ -2.06
LHX1P48742 U2.11-201ENST00000616345 191 ntBASIC2.16□□□□□ -2.06
LHX1P48742 U2.2-201ENST00000616535 191 ntBASIC2.16□□□□□ -2.06
LHX1P48742 U2.3-201ENST00000617785 191 ntBASIC2.16□□□□□ -2.06
LHX1P48742 U2.19-201ENST00000618602 191 ntBASIC2.16□□□□□ -2.06
LHX1P48742 RNU2-1-201ENST00000618664 191 ntBASIC2.16□□□□□ -2.06
LHX1P48742 U2.6-201ENST00000619225 191 ntBASIC2.16□□□□□ -2.06
LHX1P48742 U2.5-201ENST00000619465 191 ntBASIC2.16□□□□□ -2.06
LHX1P48742 U2.10-201ENST00000620268 191 ntBASIC2.16□□□□□ -2.06
LHX1P48742 MIR203B-201ENST00000636080 86 ntBASIC2.16□□□□□ -2.06
LHX1P48742 CASC19-280ENST00000642102 1351 ntBASIC2.15□□□□□ -2.07
LHX1P48742 Y_RNA.72-201ENST00000362894 103 ntBASIC2.15□□□□□ -2.07
LHX1P48742 MIR517A-201ENST00000385001 87 ntBASIC2.15□□□□□ -2.07
LHX1P48742 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
LHX1P48742 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
LHX1P48742 MTCYBP2-201ENST00000407745 171 ntBASIC2.15□□□□□ -2.07
LHX1P48742 AL139156.1-201ENST00000412785 841 ntBASIC2.15□□□□□ -2.07
LHX1P48742 IFNA20P-201ENST00000436840 528 ntBASIC2.15□□□□□ -2.07
LHX1P48742 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.15□□□□□ -2.07
LHX1P48742 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.15□□□□□ -2.07
LHX1P48742 PTP4A1P4-201ENST00000512479 322 ntBASIC2.15□□□□□ -2.07
LHX1P48742 RNU6-1088P-201ENST00000516850 104 ntBASIC2.15□□□□□ -2.07
LHX1P48742 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.15□□□□□ -2.07
LHX1P48742 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
LHX1P48742 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.15□□□□□ -2.07
LHX1P48742 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.15□□□□□ -2.07
LHX1P48742 AC016256.1-201ENST00000547971 354 ntBASIC2.15□□□□□ -2.07
LHX1P48742 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC2.15□□□□□ -2.07
LHX1P48742 CYP4A27P-201ENST00000567218 190 ntBASIC2.15□□□□□ -2.07
LHX1P48742 AC011712.1-201ENST00000588959 234 ntBASIC2.15□□□□□ -2.07
LHX1P48742 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
LHX1P48742 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
LHX1P48742 SNORA3A-201ENST00000364113 130 ntBASIC2.14□□□□□ -2.07
LHX1P48742 MIR524-201ENST00000385242 87 ntBASIC2.14□□□□□ -2.07
LHX1P48742 SNORA12-201ENST00000391162 147 ntBASIC2.14□□□□□ -2.07
LHX1P48742 MIR1294-201ENST00000408503 142 ntBASIC2.14□□□□□ -2.07
LHX1P48742 RNA5SP201-201ENST00000410316 124 ntBASIC2.14□□□□□ -2.07
LHX1P48742 AC012306.1-201ENST00000423267 114 ntBASIC2.14□□□□□ -2.07
LHX1P48742 AC027124.2-201ENST00000428249 105 ntBASIC2.14□□□□□ -2.07
LHX1P48742 Z82205.1-201ENST00000428456 297 ntBASIC2.14□□□□□ -2.07
LHX1P48742 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.14□□□□□ -2.07
LHX1P48742 DAP3P1-201ENST00000441522 278 ntBASIC2.14□□□□□ -2.07
LHX1P48742 AL353572.1-201ENST00000442490 417 ntBASIC2.14□□□□□ -2.07
LHX1P48742 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.14□□□□□ -2.07
LHX1P48742 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.14□□□□□ -2.07
LHX1P48742 IFNA11P-201ENST00000446352 526 ntBASIC2.14□□□□□ -2.07
LHX1P48742 RNU6-329P-201ENST00000459618 107 ntBASIC2.14□□□□□ -2.07
LHX1P48742 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC2.14□□□□□ -2.07
LHX1P48742 AC021146.2-201ENST00000504736 556 ntBASIC2.14□□□□□ -2.07
LHX1P48742 RNU6-566P-201ENST00000516790 107 ntBASIC2.14□□□□□ -2.07
LHX1P48742 RNA5SP454-201ENST00000517231 127 ntBASIC2.14□□□□□ -2.07
LHX1P48742 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.14□□□□□ -2.07
LHX1P48742 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.14□□□□□ -2.07
LHX1P48742 NDUFA5P6-201ENST00000542110 379 ntBASIC2.14□□□□□ -2.07
LHX1P48742 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.14□□□□□ -2.07
LHX1P48742 POLR3GP2-201ENST00000588366 668 ntBASIC2.14□□□□□ -2.07
LHX1P48742 AL158827.2-201ENST00000602494 330 ntBASIC2.14□□□□□ -2.07
LHX1P48742 AC019193.3-201ENST00000609144 554 ntBASIC2.14□□□□□ -2.07
LHX1P48742 AC245884.12-201ENST00000615364 59 ntBASIC2.14□□□□□ -2.07
LHX1P48742 AL691447.3-201ENST00000635020 330 ntBASIC2.14□□□□□ -2.07
LHX1P48742 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
LHX1P48742 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
LHX1P48742 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.14□□□□□ -2.07
LHX1P48742 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.13□□□□□ -2.07
LHX1P48742 U3.9-201ENST00000363823 204 ntBASIC2.13□□□□□ -2.07
LHX1P48742 RNU6-968P-201ENST00000384076 107 ntBASIC2.13□□□□□ -2.07
LHX1P48742 MIR208B-201ENST00000401172 77 ntBASIC2.13□□□□□ -2.07
LHX1P48742 AC019129.1-201ENST00000403786 261 ntBASIC2.13□□□□□ -2.07
LHX1P48742 RNU2-48P-201ENST00000410694 191 ntBASIC2.13□□□□□ -2.07
LHX1P48742 RNA5SP270-201ENST00000411361 118 ntBASIC2.13□□□□□ -2.07
LHX1P48742 EDDM3CP-201ENST00000415977 425 ntBASIC2.13□□□□□ -2.07
LHX1P48742 AL139396.1-201ENST00000421137 167 ntBASIC2.13□□□□□ -2.07
LHX1P48742 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.13□□□□□ -2.07
LHX1P48742 PPP1R2P5-201ENST00000457256 603 ntBASIC2.13□□□□□ -2.07
LHX1P48742 AC025033.1-201ENST00000463883 194 ntBASIC2.13□□□□□ -2.07
LHX1P48742 RPL31P58-201ENST00000469001 379 ntBASIC2.13□□□□□ -2.07
LHX1P48742 AC079804.2-201ENST00000490376 200 ntBASIC2.13□□□□□ -2.07
LHX1P48742 MTCO2P30-201ENST00000503662 364 ntBASIC2.13□□□□□ -2.07
LHX1P48742 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.13□□□□□ -2.07
LHX1P48742 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.13□□□□□ -2.07
LHX1P48742 AP005639.2-201ENST00000527592 928 ntBASIC2.13□□□□□ -2.07
LHX1P48742 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.13□□□□□ -2.07
LHX1P48742 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.13□□□□□ -2.07
LHX1P48742 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.13□□□□□ -2.07
LHX1P48742 MIR4742-201ENST00000581069 85 ntBASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms