Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RPL17P19-201ENST00000489069 552 ntBASIC2.59□□□□□ -1.99
PTPN9P43378 RPL23AP75-201ENST00000491601 451 ntBASIC2.59□□□□□ -1.99
PTPN9P43378 AC023141.11-201ENST00000508864 202 ntBASIC2.59□□□□□ -1.99
PTPN9P43378 AC093303.1-201ENST00000514549 295 ntBASIC2.59□□□□□ -1.99
PTPN9P43378 CYP4A27P-201ENST00000567218 190 ntBASIC2.59□□□□□ -1.99
PTPN9P43378 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.59□□□□□ -1.99
PTPN9P43378 AC104581.2-201ENST00000572227 430 ntBASIC2.59□□□□□ -1.99
PTPN9P43378 MIR3117-201ENST00000584034 78 ntBASIC2.59□□□□□ -1.99
PTPN9P43378 AL356280.1-201ENST00000603614 379 ntBASIC2.59□□□□□ -1.99
PTPN9P43378 Z98751.3-201ENST00000604447 521 ntBASIC2.59□□□□□ -1.99
PTPN9P43378 MIR6817-201ENST00000615588 66 ntBASIC2.59□□□□□ -1.99
PTPN9P43378 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.59□□□□□ -1.99
PTPN9P43378 AC007336.1-201ENST00000576365 3828 ntBASIC2.59□□□□□ -2
PTPN9P43378 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
PTPN9P43378 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
PTPN9P43378 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.58□□□□□ -2
PTPN9P43378 RNY1P16-201ENST00000363063 111 ntBASIC2.58□□□□□ -2
PTPN9P43378 SNORD42.2-201ENST00000365570 69 ntBASIC2.58□□□□□ -2
PTPN9P43378 MIR29B2-201ENST00000385055 81 ntBASIC2.58□□□□□ -2
PTPN9P43378 AC012306.1-201ENST00000423267 114 ntBASIC2.58□□□□□ -2
PTPN9P43378 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.58□□□□□ -2
PTPN9P43378 AL445687.1-201ENST00000439946 251 ntBASIC2.58□□□□□ -2
PTPN9P43378 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.58□□□□□ -2
PTPN9P43378 AL353705.4-201ENST00000449661 238 ntBASIC2.58□□□□□ -2
PTPN9P43378 Y_RNA.639-201ENST00000458981 102 ntBASIC2.58□□□□□ -2
PTPN9P43378 RNU6-470P-201ENST00000515954 104 ntBASIC2.58□□□□□ -2
PTPN9P43378 SNORA31.16-201ENST00000516773 139 ntBASIC2.58□□□□□ -2
PTPN9P43378 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.58□□□□□ -2
PTPN9P43378 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.58□□□□□ -2
PTPN9P43378 AL590705.4-201ENST00000532209 134 ntBASIC2.58□□□□□ -2
PTPN9P43378 MRPS36P4-201ENST00000534436 298 ntBASIC2.58□□□□□ -2
PTPN9P43378 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.58□□□□□ -2
PTPN9P43378 MIR3162-201ENST00000581818 82 ntBASIC2.58□□□□□ -2
PTPN9P43378 MIR4719-201ENST00000585233 84 ntBASIC2.58□□□□□ -2
PTPN9P43378 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.58□□□□□ -2
PTPN9P43378 RPL30P11-203ENST00000598995 310 ntBASIC2.58□□□□□ -2
PTPN9P43378 AL078605.1-201ENST00000603529 500 ntBASIC2.58□□□□□ -2
PTPN9P43378 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.58□□□□□ -2
PTPN9P43378 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.58□□□□□ -2
PTPN9P43378 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.57□□□□□ -2
PTPN9P43378 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
PTPN9P43378 RNU6-490P-201ENST00000362985 107 ntBASIC2.57□□□□□ -2
PTPN9P43378 Y_RNA.813-201ENST00000364639 102 ntBASIC2.57□□□□□ -2
PTPN9P43378 Y_RNA.395-201ENST00000383945 109 ntBASIC2.57□□□□□ -2
PTPN9P43378 Y_RNA.579-201ENST00000390939 94 ntBASIC2.57□□□□□ -2
PTPN9P43378 AL359511.1-201ENST00000402970 211 ntBASIC2.57□□□□□ -2
PTPN9P43378 RNA5SP201-201ENST00000410316 124 ntBASIC2.57□□□□□ -2
PTPN9P43378 RNU6-1304P-201ENST00000411374 106 ntBASIC2.57□□□□□ -2
PTPN9P43378 MTCYBP10-201ENST00000424905 650 ntBASIC2.57□□□□□ -2
PTPN9P43378 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.57□□□□□ -2
PTPN9P43378 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.57□□□□□ -2
PTPN9P43378 AC073901.1-201ENST00000462471 408 ntBASIC2.57□□□□□ -2
PTPN9P43378 AC068781.1-201ENST00000488231 618 ntBASIC2.57□□□□□ -2
PTPN9P43378 AF186996.7-201ENST00000492781 209 ntBASIC2.57□□□□□ -2
PTPN9P43378 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.57□□□□□ -2
PTPN9P43378 SNORA25.11-201ENST00000515935 105 ntBASIC2.57□□□□□ -2
PTPN9P43378 RNU6-976P-201ENST00000516086 111 ntBASIC2.57□□□□□ -2
PTPN9P43378 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.57□□□□□ -2
PTPN9P43378 RNU6-264P-201ENST00000517134 104 ntBASIC2.57□□□□□ -2
PTPN9P43378 RN7SKP40-201ENST00000517211 242 ntBASIC2.57□□□□□ -2
PTPN9P43378 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.57□□□□□ -2
PTPN9P43378 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.57□□□□□ -2
PTPN9P43378 AC093249.1-201ENST00000567049 203 ntBASIC2.57□□□□□ -2
PTPN9P43378 MIR3923-201ENST00000579521 83 ntBASIC2.57□□□□□ -2
PTPN9P43378 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.57□□□□□ -2
PTPN9P43378 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.57□□□□□ -2
PTPN9P43378 AC080078.3-201ENST00000605407 463 ntBASIC2.57□□□□□ -2
PTPN9P43378 RMST_6.1-201ENST00000611980 203 ntBASIC2.57□□□□□ -2
PTPN9P43378 AC016717.2-201ENST00000609089 5141 ntBASIC2.57□□□□□ -2
PTPN9P43378 ZNF271P-202ENST00000465539 1970 ntBASIC2.57□□□□□ -2
PTPN9P43378 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.57□□□□□ -2
PTPN9P43378 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.57□□□□□ -2
PTPN9P43378 Z82195.2-201ENST00000612348 18351 ntBASIC2.56□□□□□ -2
PTPN9P43378 RNU6-137P-201ENST00000363680 108 ntBASIC2.56□□□□□ -2
PTPN9P43378 Y_RNA.197-201ENST00000364004 102 ntBASIC2.56□□□□□ -2
PTPN9P43378 DEFA7P-201ENST00000382676 285 ntBASIC2.56□□□□□ -2
PTPN9P43378 Y_RNA.577-201ENST00000384794 101 ntBASIC2.56□□□□□ -2
PTPN9P43378 MIR95-201ENST00000385072 81 ntBASIC2.56□□□□□ -2
PTPN9P43378 RNA5SP494-201ENST00000410653 129 ntBASIC2.56□□□□□ -2
PTPN9P43378 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.56□□□□□ -2
PTPN9P43378 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.56□□□□□ -2
PTPN9P43378 snoU13.30-201ENST00000458951 104 ntBASIC2.56□□□□□ -2
PTPN9P43378 AC021146.2-201ENST00000504736 556 ntBASIC2.56□□□□□ -2
PTPN9P43378 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.56□□□□□ -2
PTPN9P43378 RNA5SP148-201ENST00000516527 94 ntBASIC2.56□□□□□ -2
PTPN9P43378 AL713866.2-201ENST00000603579 219 ntBASIC2.56□□□□□ -2
PTPN9P43378 AC006023.1-201ENST00000603944 259 ntBASIC2.56□□□□□ -2
PTPN9P43378 AL080274.1-201ENST00000605565 220 ntBASIC2.56□□□□□ -2
PTPN9P43378 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.56□□□□□ -2
PTPN9P43378 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.56□□□□□ -2
PTPN9P43378 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.56□□□□□ -2
PTPN9P43378 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
PTPN9P43378 RNU6-1115P-201ENST00000362490 106 ntBASIC2.55□□□□□ -2
PTPN9P43378 RNU4-15P-201ENST00000362613 141 ntBASIC2.55□□□□□ -2
PTPN9P43378 RNU6-1159P-201ENST00000362933 107 ntBASIC2.55□□□□□ -2
PTPN9P43378 SNORD115-8-201ENST00000363856 82 ntBASIC2.55□□□□□ -2
PTPN9P43378 SNORD115-38-201ENST00000365037 82 ntBASIC2.55□□□□□ -2
PTPN9P43378 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
PTPN9P43378 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.55□□□□□ -2
PTPN9P43378 Y_RNA.419-201ENST00000384041 102 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms