Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXC9P31274 AC009487.4-201ENST00000624969 3585 ntBASIC2.52□□□□□ -2.01
HOXC9P31274 AC010329.5-201ENST00000623497 2174 ntBASIC2.52□□□□□ -2.01
HOXC9P31274 RNU6-227P-201ENST00000362865 103 ntBASIC2.52□□□□□ -2.01
HOXC9P31274 Y_RNA.356-201ENST00000365475 113 ntBASIC2.52□□□□□ -2.01
HOXC9P31274 RNU6-1222P-201ENST00000384615 107 ntBASIC2.52□□□□□ -2.01
HOXC9P31274 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.52□□□□□ -2.01
HOXC9P31274 BTF3L4P2-201ENST00000392798 346 ntBASIC2.52□□□□□ -2.01
HOXC9P31274 RPL37P10-201ENST00000412884 288 ntBASIC2.52□□□□□ -2.01
HOXC9P31274 AC108667.1-201ENST00000428618 249 ntBASIC2.52□□□□□ -2.01
HOXC9P31274 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXC9P31274 RPL23AP7-203ENST00000449021 469 ntBASIC2.52□□□□□ -2.01
HOXC9P31274 AC073901.1-201ENST00000462471 408 ntBASIC2.52□□□□□ -2.01
HOXC9P31274 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXC9P31274 PTP4A1P4-201ENST00000512479 322 ntBASIC2.52□□□□□ -2.01
HOXC9P31274 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXC9P31274 RNU2-53P-201ENST00000516257 147 ntBASIC2.52□□□□□ -2.01
HOXC9P31274 HSPE1P4-201ENST00000550617 308 ntBASIC2.52□□□□□ -2.01
HOXC9P31274 POLR3GP2-201ENST00000588366 668 ntBASIC2.52□□□□□ -2.01
HOXC9P31274 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXC9P31274 MIR7157-201ENST00000635801 60 ntBASIC2.52□□□□□ -2.01
HOXC9P31274 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.52□□□□□ -2.01
HOXC9P31274 Y_RNA.123-201ENST00000363338 102 ntBASIC2.51□□□□□ -2.01
HOXC9P31274 RNU6-1059P-201ENST00000363752 98 ntBASIC2.51□□□□□ -2.01
HOXC9P31274 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HOXC9P31274 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
HOXC9P31274 Y_RNA.604-201ENST00000410574 102 ntBASIC2.51□□□□□ -2.01
HOXC9P31274 AP000275.1-201ENST00000411943 390 ntBASIC2.51□□□□□ -2.01
HOXC9P31274 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.51□□□□□ -2.01
HOXC9P31274 EIF4EP4-201ENST00000424916 578 ntBASIC2.51□□□□□ -2.01
HOXC9P31274 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.51□□□□□ -2.01
HOXC9P31274 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXC9P31274 RN7SKP210-201ENST00000459176 261 ntBASIC2.51□□□□□ -2.01
HOXC9P31274 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXC9P31274 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.51□□□□□ -2.01
HOXC9P31274 AC104564.1-201ENST00000493028 407 ntBASIC2.51□□□□□ -2.01
HOXC9P31274 AC114801.2-201ENST00000503825 781 ntBASIC2.51□□□□□ -2.01
HOXC9P31274 Y_RNA.691-201ENST00000516611 103 ntBASIC2.51□□□□□ -2.01
HOXC9P31274 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.51□□□□□ -2.01
HOXC9P31274 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXC9P31274 CPDP1-201ENST00000579660 283 ntBASIC2.51□□□□□ -2.01
HOXC9P31274 MIR3683-201ENST00000580847 82 ntBASIC2.51□□□□□ -2.01
HOXC9P31274 AC105245.1-201ENST00000581934 244 ntBASIC2.51□□□□□ -2.01
HOXC9P31274 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.51□□□□□ -2.01
HOXC9P31274 AC009233.1-201ENST00000616477 371 ntBASIC2.51□□□□□ -2.01
HOXC9P31274 RNU6-655P-201ENST00000362858 107 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 SNORD32A-201ENST00000364805 84 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 Y_RNA.504-201ENST00000384481 104 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 RNU6-601P-201ENST00000384540 107 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
HOXC9P31274 RN7SKP158-201ENST00000410453 326 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 RNU6-1304P-201ENST00000411374 106 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 AL358453.1-201ENST00000422522 250 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 AC008267.5-201ENST00000424928 265 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXC9P31274 RPS29P27-201ENST00000463711 170 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 AC025033.1-201ENST00000463883 194 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 ACA59.1-201ENST00000515966 143 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXC9P31274 AC007375.1-201ENST00000554513 578 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 MIR3616-201ENST00000584070 92 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXC9P31274 AC018889.1-201ENST00000605372 397 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 AC069294.1-201ENST00000608397 350 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 MIR1302-1-201ENST00000637932 143 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.5□□□□□ -2.01
HOXC9P31274 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.5□□□□□ -2.01
HOXC9P31274 Z82195.2-201ENST00000612348 18351 ntBASIC2.5□□□□□ -2.01
HOXC9P31274 MTND4P27-201ENST00000450813 1354 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 AC005336.3-201ENST00000623833 2679 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
HOXC9P31274 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.49□□□□□ -2.01
HOXC9P31274 RNU6-1141P-201ENST00000364520 107 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 Y_RNA.339-201ENST00000365325 102 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 Y_RNA.529-201ENST00000384586 119 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 RNU4-14P-201ENST00000410858 122 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 EIF1AXP1-201ENST00000419267 435 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 NCOR1P3-201ENST00000420479 303 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 USP9YP30-201ENST00000430729 455 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.49□□□□□ -2.01
HOXC9P31274 AL133396.1-201ENST00000432048 687 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 AC244670.1-201ENST00000436879 112 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 DAP3P1-201ENST00000441522 278 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 SNRPEP8-201ENST00000442866 260 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 SNORD13-201ENST00000459299 104 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.49□□□□□ -2.01
HOXC9P31274 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 GNAI2P1-201ENST00000541815 315 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.49□□□□□ -2.01
HOXC9P31274 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.49□□□□□ -2.01
HOXC9P31274 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 RPL30P11-203ENST00000598995 310 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 AL356280.1-201ENST00000603614 379 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 MIR8076-201ENST00000611401 83 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 AC084768.2-201ENST00000622736 221 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 AC090517.3-201ENST00000625170 141 ntBASIC2.49□□□□□ -2.01
HOXC9P31274 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.49□□□□□ -2.01
HOXC9P31274 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.49□□□□□ -2.01
HOXC9P31274 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
HOXC9P31274 RNU6-1210P-201ENST00000363775 107 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms