Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.3□□□□□ -1.72
RFX1P22670 AL591424.2-201ENST00000617023 128 ntBASIC4.3□□□□□ -1.72
RFX1P22670 AL354798.1-201ENST00000622505 329 ntBASIC4.3□□□□□ -1.72
RFX1P22670 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.3□□□□□ -1.72
RFX1P22670 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
RFX1P22670 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.3□□□□□ -1.72
RFX1P22670 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
RFX1P22670 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
RFX1P22670 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.29□□□□□ -1.72
RFX1P22670 snoU2_19.1-201ENST00000362361 80 ntBASIC4.29□□□□□ -1.72
RFX1P22670 RNA5SP139-201ENST00000364340 117 ntBASIC4.29□□□□□ -1.72
RFX1P22670 SNORD32B-201ENST00000364460 84 ntBASIC4.29□□□□□ -1.72
RFX1P22670 SNORA18.2-201ENST00000383865 132 ntBASIC4.29□□□□□ -1.72
RFX1P22670 RNU6ATAC15P-201ENST00000408279 121 ntBASIC4.29□□□□□ -1.72
RFX1P22670 Y_RNA.597-201ENST00000410463 100 ntBASIC4.29□□□□□ -1.72
RFX1P22670 RNU6-107P-201ENST00000516643 102 ntBASIC4.29□□□□□ -1.72
RFX1P22670 RNU6-1212P-201ENST00000517023 104 ntBASIC4.29□□□□□ -1.72
RFX1P22670 AC103810.1-201ENST00000579873 453 ntBASIC4.29□□□□□ -1.72
RFX1P22670 AC008739.2-201ENST00000597006 317 ntBASIC4.29□□□□□ -1.72
RFX1P22670 AC007179.3-201ENST00000604976 235 ntBASIC4.29□□□□□ -1.72
RFX1P22670 MIR6868-201ENST00000611215 58 ntBASIC4.29□□□□□ -1.72
RFX1P22670 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
RFX1P22670 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
RFX1P22670 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.28□□□□□ -1.72
RFX1P22670 RNU6-486P-201ENST00000363116 107 ntBASIC4.28□□□□□ -1.72
RFX1P22670 RNU6-454P-201ENST00000364292 107 ntBASIC4.28□□□□□ -1.72
RFX1P22670 RNU6-746P-201ENST00000384112 109 ntBASIC4.28□□□□□ -1.72
RFX1P22670 RNA5SP504-201ENST00000410676 117 ntBASIC4.28□□□□□ -1.72
RFX1P22670 AC093578.1-201ENST00000415219 368 ntBASIC4.28□□□□□ -1.72
RFX1P22670 RPL23AP62-201ENST00000463396 453 ntBASIC4.28□□□□□ -1.72
RFX1P22670 VWA8P1-201ENST00000510889 176 ntBASIC4.28□□□□□ -1.72
RFX1P22670 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.28□□□□□ -1.72
RFX1P22670 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC4.28□□□□□ -1.72
RFX1P22670 AC022559.1-201ENST00000520905 205 ntBASIC4.28□□□□□ -1.72
RFX1P22670 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.28□□□□□ -1.72
RFX1P22670 AL360157.1-201ENST00000565962 87 ntBASIC4.28□□□□□ -1.72
RFX1P22670 DEFB117-201ENST00000602356 141 ntBASIC4.28□□□□□ -1.72
RFX1P22670 AC008873.1-201ENST00000625051 138 ntBASIC4.28□□□□□ -1.72
RFX1P22670 AC110079.1-202ENST00000635213 138 ntBASIC4.28□□□□□ -1.72
RFX1P22670 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
RFX1P22670 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.27□□□□□ -1.73
RFX1P22670 U3.8-201ENST00000363675 217 ntBASIC4.27□□□□□ -1.73
RFX1P22670 RNA5SP399-201ENST00000364003 117 ntBASIC4.27□□□□□ -1.73
RFX1P22670 RNU6-918P-201ENST00000391219 106 ntBASIC4.27□□□□□ -1.73
RFX1P22670 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.27□□□□□ -1.73
RFX1P22670 TOMM22P2-201ENST00000430735 237 ntBASIC4.27□□□□□ -1.73
RFX1P22670 AL392103.1-201ENST00000447000 198 ntBASIC4.27□□□□□ -1.73
RFX1P22670 RPL31P41-201ENST00000477967 372 ntBASIC4.27□□□□□ -1.73
RFX1P22670 SNORA74D-201ENST00000516404 141 ntBASIC4.27□□□□□ -1.73
RFX1P22670 HSPE1P18-201ENST00000517602 280 ntBASIC4.27□□□□□ -1.73
RFX1P22670 AP005660.1-201ENST00000522972 293 ntBASIC4.27□□□□□ -1.73
RFX1P22670 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.27□□□□□ -1.73
RFX1P22670 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.27□□□□□ -1.73
RFX1P22670 RPL30P11-203ENST00000598995 310 ntBASIC4.27□□□□□ -1.73
RFX1P22670 AC010620.2-201ENST00000600135 313 ntBASIC4.27□□□□□ -1.73
RFX1P22670 AL670379.2-201ENST00000604983 252 ntBASIC4.27□□□□□ -1.73
RFX1P22670 AL121772.2-201ENST00000614331 297 ntBASIC4.27□□□□□ -1.73
RFX1P22670 snoU18.1-201ENST00000629629 71 ntBASIC4.27□□□□□ -1.73
RFX1P22670 AC091152.2-201ENST00000591628 2569 ntBASIC4.27□□□□□ -1.73
RFX1P22670 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
RFX1P22670 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.26□□□□□ -1.73
RFX1P22670 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
RFX1P22670 AL161912.2-201ENST00000565707 3007 ntBASIC4.26□□□□□ -1.73
RFX1P22670 RNA5SP124-201ENST00000362739 110 ntBASIC4.26□□□□□ -1.73
RFX1P22670 SNORD87-201ENST00000364849 89 ntBASIC4.26□□□□□ -1.73
RFX1P22670 MIR591-201ENST00000385290 95 ntBASIC4.26□□□□□ -1.73
RFX1P22670 RN7SKP156-201ENST00000410308 342 ntBASIC4.26□□□□□ -1.73
RFX1P22670 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC4.26□□□□□ -1.73
RFX1P22670 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC4.26□□□□□ -1.73
RFX1P22670 AC109925.1-201ENST00000478069 331 ntBASIC4.26□□□□□ -1.73
RFX1P22670 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC4.26□□□□□ -1.73
RFX1P22670 RNU6-436P-201ENST00000516171 114 ntBASIC4.26□□□□□ -1.73
RFX1P22670 RNU6-406P-201ENST00000516470 107 ntBASIC4.26□□□□□ -1.73
RFX1P22670 RNU6-255P-201ENST00000516957 105 ntBASIC4.26□□□□□ -1.73
RFX1P22670 AC096577.2-201ENST00000611455 153 ntBASIC4.26□□□□□ -1.73
RFX1P22670 AL034408.1-202ENST00000636088 415 ntBASIC4.26□□□□□ -1.73
RFX1P22670 AC009093.8-201ENST00000641769 292 ntBASIC4.26□□□□□ -1.73
RFX1P22670 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
RFX1P22670 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.26□□□□□ -1.73
RFX1P22670 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
RFX1P22670 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC4.25□□□□□ -1.73
RFX1P22670 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
RFX1P22670 RNA5SP119-201ENST00000362715 117 ntBASIC4.25□□□□□ -1.73
RFX1P22670 RNU6-774P-201ENST00000363238 107 ntBASIC4.25□□□□□ -1.73
RFX1P22670 Y_RNA.329-201ENST00000365209 107 ntBASIC4.25□□□□□ -1.73
RFX1P22670 HMGN2P8-201ENST00000391458 268 ntBASIC4.25□□□□□ -1.73
RFX1P22670 U3.40-201ENST00000408706 208 ntBASIC4.25□□□□□ -1.73
RFX1P22670 AC024067.1-201ENST00000426199 223 ntBASIC4.25□□□□□ -1.73
RFX1P22670 MICF-203ENST00000432679 129 ntBASIC4.25□□□□□ -1.73
RFX1P22670 Z75741.1-201ENST00000446793 314 ntBASIC4.25□□□□□ -1.73
RFX1P22670 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.25□□□□□ -1.73
RFX1P22670 SNORA70.14-201ENST00000516205 110 ntBASIC4.25□□□□□ -1.73
RFX1P22670 RNY3P16-201ENST00000516338 101 ntBASIC4.25□□□□□ -1.73
RFX1P22670 YPEL5P3-201ENST00000547227 352 ntBASIC4.25□□□□□ -1.73
RFX1P22670 MIR486-1-201ENST00000612171 68 ntBASIC4.25□□□□□ -1.73
RFX1P22670 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.25□□□□□ -1.73
RFX1P22670 UCA1.1-201ENST00000620952 75 ntBASIC4.25□□□□□ -1.73
RFX1P22670 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.25□□□□□ -1.73
RFX1P22670 AC093010.3-201ENST00000570269 15214 ntBASIC4.25□□□□□ -1.73
RFX1P22670 CEP170P1-201ENST00000502249 4587 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms