Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC098831.1-201ENST00000440661 216 ntBASIC-1.11□□□□□ -2.59
VCANP13611 SNORA25.18-201ENST00000607153 114 ntBASIC-1.11□□□□□ -2.59
VCANP13611 AL355802.4-201ENST00000607635 548 ntBASIC-1.11□□□□□ -2.59
VCANP13611 AC004223.4-201ENST00000612426 332 ntBASIC-1.11□□□□□ -2.59
VCANP13611 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC-1.12□□□□□ -2.59
VCANP13611 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.12□□□□□ -2.59
VCANP13611 AC069294.1-201ENST00000608397 350 ntBASIC-1.12□□□□□ -2.59
VCANP13611 AL355816.2-201ENST00000610049 647 ntBASIC-1.12□□□□□ -2.59
VCANP13611 MIR597-201ENST00000384968 97 ntBASIC-1.12□□□□□ -2.59
VCANP13611 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC-1.12□□□□□ -2.59
VCANP13611 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC-1.12□□□□□ -2.59
VCANP13611 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC-1.12□□□□□ -2.59
VCANP13611 MTND2P21-201ENST00000436242 1042 ntBASIC-1.12□□□□□ -2.59
VCANP13611 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC-1.12□□□□□ -2.59
VCANP13611 snoU13.13-201ENST00000458842 104 ntBASIC-1.12□□□□□ -2.59
VCANP13611 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC-1.12□□□□□ -2.59
VCANP13611 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC-1.12□□□□□ -2.59
VCANP13611 AC107304.1-201ENST00000604229 296 ntBASIC-1.12□□□□□ -2.59
VCANP13611 ZNF204P-201ENST00000416749 2397 ntBASIC-1.12□□□□□ -2.59
VCANP13611 RPL23AP50-201ENST00000434149 455 ntBASIC-1.13□□□□□ -2.59
VCANP13611 snoU13.7-201ENST00000459220 104 ntBASIC-1.13□□□□□ -2.59
VCANP13611 RNU7-21P-201ENST00000459430 62 ntBASIC-1.13□□□□□ -2.59
VCANP13611 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC-1.13□□□□□ -2.59
VCANP13611 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC-1.13□□□□□ -2.59
VCANP13611 AC069304.3-201ENST00000603938 1084 ntBASIC-1.13□□□□□ -2.59
VCANP13611 AL390208.1-201ENST00000605885 644 ntBASIC-1.13□□□□□ -2.59
VCANP13611 RNA5SP163-201ENST00000410304 99 ntBASIC-1.13□□□□□ -2.59
VCANP13611 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC-1.13□□□□□ -2.59
VCANP13611 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC-1.13□□□□□ -2.59
VCANP13611 OFD1P7Y-201ENST00000454643 1155 ntBASIC-1.13□□□□□ -2.59
VCANP13611 AC073968.1-201ENST00000618594 637 ntBASIC-1.13□□□□□ -2.59
VCANP13611 RNU6-225P-201ENST00000384613 103 ntBASIC-1.13□□□□□ -2.59
VCANP13611 AC016831.2-201ENST00000417179 352 ntBASIC-1.13□□□□□ -2.59
VCANP13611 AC007969.2-201ENST00000441891 191 ntBASIC-1.13□□□□□ -2.59
VCANP13611 SNORA18.4-201ENST00000516440 124 ntBASIC-1.13□□□□□ -2.59
VCANP13611 POLR3GP2-201ENST00000588366 668 ntBASIC-1.13□□□□□ -2.59
VCANP13611 AL031281.1-201ENST00000604049 488 ntBASIC-1.13□□□□□ -2.59
VCANP13611 AC135803.1-201ENST00000608748 565 ntBASIC-1.13□□□□□ -2.59
VCANP13611 AC015726.2-201ENST00000620112 122 ntBASIC-1.13□□□□□ -2.59
VCANP13611 uc_338.16-201ENST00000621804 95 ntBASIC-1.13□□□□□ -2.59
VCANP13611 AP003072.4-201ENST00000624580 310 ntBASIC-1.13□□□□□ -2.59
VCANP13611 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC-1.14□□□□□ -2.59
VCANP13611 RNU6-447P-201ENST00000410293 104 ntBASIC-1.14□□□□□ -2.59
VCANP13611 RNU6-1118P-201ENST00000410382 104 ntBASIC-1.14□□□□□ -2.59
VCANP13611 RNU6-1076P-201ENST00000410397 104 ntBASIC-1.14□□□□□ -2.59
VCANP13611 RNU6-355P-201ENST00000410427 104 ntBASIC-1.14□□□□□ -2.59
VCANP13611 RNU6-791P-201ENST00000410467 104 ntBASIC-1.14□□□□□ -2.59
VCANP13611 RNU6-1100P-201ENST00000410691 104 ntBASIC-1.14□□□□□ -2.59
VCANP13611 RNU6-860P-201ENST00000410860 104 ntBASIC-1.14□□□□□ -2.59
VCANP13611 RNU6-1199P-201ENST00000411249 104 ntBASIC-1.14□□□□□ -2.59
VCANP13611 RNU6-1217P-201ENST00000411276 104 ntBASIC-1.14□□□□□ -2.59
VCANP13611 RNU6-785P-201ENST00000411324 104 ntBASIC-1.14□□□□□ -2.59
VCANP13611 RNA5SP66-201ENST00000517178 101 ntBASIC-1.14□□□□□ -2.59
VCANP13611 AC126365.2-201ENST00000580630 379 ntBASIC-1.14□□□□□ -2.59
VCANP13611 U6.90-201ENST00000614007 104 ntBASIC-1.14□□□□□ -2.59
VCANP13611 U6.70-201ENST00000620287 104 ntBASIC-1.14□□□□□ -2.59
VCANP13611 U8.15-201ENST00000390947 134 ntBASIC-1.14□□□□□ -2.59
VCANP13611 ZNF519P3-201ENST00000557158 1032 ntBASIC-1.14□□□□□ -2.59
VCANP13611 AC068790.2-201ENST00000602601 557 ntBASIC-1.14□□□□□ -2.59
VCANP13611 MIR6502-201ENST00000617296 76 ntBASIC-1.14□□□□□ -2.59
VCANP13611 RNU4-28P-201ENST00000364739 141 ntBASIC-1.14□□□□□ -2.59
VCANP13611 RNU6-47P-201ENST00000383866 107 ntBASIC-1.14□□□□□ -2.59
VCANP13611 SNORA36A-201ENST00000384221 132 ntBASIC-1.14□□□□□ -2.59
VCANP13611 GTF2IP20-201ENST00000431663 360 ntBASIC-1.14□□□□□ -2.59
VCANP13611 AL606517.2-201ENST00000442855 241 ntBASIC-1.14□□□□□ -2.59
VCANP13611 RNU6-180P-201ENST00000516697 61 ntBASIC-1.14□□□□□ -2.59
VCANP13611 MTND4P9-201ENST00000507819 1346 ntBASIC-1.15□□□□□ -2.59
VCANP13611 RNU6-228P-201ENST00000362700 106 ntBASIC-1.15□□□□□ -2.59
VCANP13611 AP005212.4-201ENST00000614206 710 ntBASIC-1.15□□□□□ -2.59
VCANP13611 AL596211.1-201ENST00000569873 2277 ntBASIC-1.15□□□□□ -2.59
VCANP13611 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.15□□□□□ -2.59
VCANP13611 AL663109.1-201ENST00000411498 844 ntBASIC-1.15□□□□□ -2.59
VCANP13611 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC-1.15□□□□□ -2.59
VCANP13611 MTND5P2-201ENST00000442927 1142 ntBASIC-1.15□□□□□ -2.59
VCANP13611 AL133217.1-201ENST00000450980 425 ntBASIC-1.15□□□□□ -2.59
VCANP13611 AC093850.1-201ENST00000454121 251 ntBASIC-1.15□□□□□ -2.59
VCANP13611 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC-1.15□□□□□ -2.59
VCANP13611 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC-1.15□□□□□ -2.59
VCANP13611 AC131235.4-201ENST00000609288 620 ntBASIC-1.15□□□□□ -2.59
VCANP13611 AC027309.3-201ENST00000623419 351 ntBASIC-1.15□□□□□ -2.59
VCANP13611 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.16□□□□□ -2.59
VCANP13611 MIR873-201ENST00000401120 77 ntBASIC-1.16□□□□□ -2.59
VCANP13611 RNU6-233P-201ENST00000410845 141 ntBASIC-1.16□□□□□ -2.59
VCANP13611 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC-1.16□□□□□ -2.59
VCANP13611 AC069257.2-201ENST00000441819 155 ntBASIC-1.16□□□□□ -2.59
VCANP13611 AC091135.1-201ENST00000585943 307 ntBASIC-1.16□□□□□ -2.59
VCANP13611 MIR499B-201ENST00000636498 73 ntBASIC-1.16□□□□□ -2.59
VCANP13611 AC132825.6-201ENST00000638861 357 ntBASIC-1.16□□□□□ -2.59
VCANP13611 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.16□□□□□ -2.6
VCANP13611 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.16□□□□□ -2.6
VCANP13611 SNORD18.1-201ENST00000363807 70 ntBASIC-1.16□□□□□ -2.6
VCANP13611 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-1.16□□□□□ -2.6
VCANP13611 MIR548H1-201ENST00000408610 102 ntBASIC-1.16□□□□□ -2.6
VCANP13611 AC021146.6-201ENST00000514659 117 ntBASIC-1.16□□□□□ -2.6
VCANP13611 AC005562.2-201ENST00000618264 111 ntBASIC-1.16□□□□□ -2.6
VCANP13611 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC-1.16□□□□□ -2.6
VCANP13611 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC-1.16□□□□□ -2.6
VCANP13611 MIR454-201ENST00000390180 115 ntBASIC-1.17□□□□□ -2.6
VCANP13611 RPS20P2-201ENST00000402520 389 ntBASIC-1.17□□□□□ -2.6
VCANP13611 RNA5SP111-201ENST00000411386 101 ntBASIC-1.17□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms