Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC0.51□□□□□ -2.33
TRAV1-1A0A0B4J248 AC005520.5-201ENST00000613926 164 ntBASIC0.51□□□□□ -2.33
TRAV1-1A0A0B4J248 MIR338-201ENST00000636369 67 ntBASIC0.51□□□□□ -2.33
TRAV1-1A0A0B4J248 AL450472.1-202ENST00000637286 180 ntBASIC0.51□□□□□ -2.33
TRAV1-1A0A0B4J248 AC013437.2-201ENST00000639587 677 ntBASIC0.51□□□□□ -2.33
TRAV1-1A0A0B4J248 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
TRAV1-1A0A0B4J248 Y_RNA.22-201ENST00000362492 102 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 Y_RNA.796-201ENST00000364268 102 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 Y_RNA.799-201ENST00000364992 102 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 SNORD12-201ENST00000391002 90 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 RPS29P13-201ENST00000402041 169 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 MTCYBP36-201ENST00000404146 440 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU2-39P-201ENST00000410604 198 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU6-733P-201ENST00000410759 104 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU6-1054P-201ENST00000411293 104 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 MTCO2P21-201ENST00000419780 677 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 RPL23AP95-201ENST00000426806 265 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 AC004941.2-201ENST00000427009 228 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 MTND1P20-201ENST00000430341 950 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 AC117522.1-201ENST00000509821 380 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 PSMC1P5-201ENST00000512850 177 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU6-377P-201ENST00000515965 102 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 AC021231.3-201ENST00000558497 370 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 MIR4698-201ENST00000577795 80 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 SNORA4-201ENST00000584302 138 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 AL590095.2-201ENST00000604136 117 ntBASIC0.5□□□□□ -2.33
TRAV1-1A0A0B4J248 AC092268.1-201ENST00000342691 405 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 MIR96-201ENST00000362288 78 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU4-56P-201ENST00000364700 142 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 SNORD114-24-201ENST00000365029 72 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU6-378P-201ENST00000384324 107 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 MIR608-201ENST00000384820 100 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 MIR92A1-201ENST00000385233 78 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU6-387P-201ENST00000411331 105 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 RPL22P17-201ENST00000438729 315 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 AC117454.1-201ENST00000491120 168 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 AC112204.1-201ENST00000502591 103 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 AC116347.2-201ENST00000514912 523 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU5F-4P-201ENST00000516581 114 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU6-197P-201ENST00000516680 100 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 AC109479.2-201ENST00000517842 174 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 AC136628.3-201ENST00000521868 290 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 AC133485.1-201ENST00000567176 124 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 AC138907.6-201ENST00000568401 126 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 MIR5000-201ENST00000577717 103 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 AC078795.3-201ENST00000602913 472 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 AC069431.2-201ENST00000604149 1099 ntBASIC0.49□□□□□ -2.33
TRAV1-1A0A0B4J248 BX322639.1-202ENST00000423987 2213 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU6-336P-201ENST00000364891 107 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 Y_RNA.324-201ENST00000365165 102 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 Y_RNA.355-201ENST00000365462 98 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 RNA5SP259-201ENST00000365541 109 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU6-157P-201ENST00000383957 107 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 MIR548J-201ENST00000408833 112 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 RNA5SP111-201ENST00000411386 101 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 RPS27AP14-201ENST00000422868 454 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 AC002429.1-201ENST00000437672 148 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 RPS24P1-201ENST00000438550 371 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 RPS23P5-201ENST00000495419 428 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 AC010587.1-201ENST00000505809 469 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 ARL2BPP4-201ENST00000506854 471 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 AC034244.1-201ENST00000507687 207 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 AC104136.1-201ENST00000512969 394 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU2-34P-201ENST00000516534 121 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 RNA5SP168-201ENST00000516642 112 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 AP001893.2-201ENST00000526949 202 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 AL137100.2-201ENST00000555786 315 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 CYP3A137P-201ENST00000562436 69 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 AC022432.1-201ENST00000595739 310 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 AC105148.1-201ENST00000604961 409 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 AC009994.1-201ENST00000606889 253 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 AC009509.4-201ENST00000619202 509 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 MIR6835-201ENST00000621552 64 ntBASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
TRAV1-1A0A0B4J248 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.47□□□□□ -2.33
TRAV1-1A0A0B4J248 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU4-79P-201ENST00000362764 141 ntBASIC0.47□□□□□ -2.33
TRAV1-1A0A0B4J248 Y_RNA.132-201ENST00000363421 102 ntBASIC0.47□□□□□ -2.33
TRAV1-1A0A0B4J248 SNORA72.2-201ENST00000365028 127 ntBASIC0.47□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU6-877P-201ENST00000383868 107 ntBASIC0.47□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU6-45P-201ENST00000384471 107 ntBASIC0.47□□□□□ -2.33
TRAV1-1A0A0B4J248 RNU6-1242P-201ENST00000391052 103 ntBASIC0.47□□□□□ -2.33
TRAV1-1A0A0B4J248 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.47□□□□□ -2.33
TRAV1-1A0A0B4J248 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.47□□□□□ -2.33
TRAV1-1A0A0B4J248 SNORD124-201ENST00000459577 104 ntBASIC0.47□□□□□ -2.33
TRAV1-1A0A0B4J248 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.47□□□□□ -2.33
TRAV1-1A0A0B4J248 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.47□□□□□ -2.33
TRAV1-1A0A0B4J248 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.47□□□□□ -2.33
TRAV1-1A0A0B4J248 AC023050.3-201ENST00000541142 333 ntBASIC0.47□□□□□ -2.33
TRAV1-1A0A0B4J248 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC0.47□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms