Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RNU6-222P-201ENST00000362438 107 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 RNA5SP383-201ENST00000362934 120 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 RNU6-799P-201ENST00000363567 107 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 U8.9-201ENST00000365667 134 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 MIR490-201ENST00000384865 128 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 MIR218-2-201ENST00000385006 110 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 SNORA26.7-201ENST00000391288 122 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
VSX1Q9NZR4 RNU5A-5P-201ENST00000411054 116 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 RNU6-130P-201ENST00000411112 103 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC2.95□□□□□ -1.94
VSX1Q9NZR4 CST9LP2-201ENST00000437612 320 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 U8.22-201ENST00000459141 133 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.95□□□□□ -1.94
VSX1Q9NZR4 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.95□□□□□ -1.94
VSX1Q9NZR4 RNU5F-2P-201ENST00000516066 82 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 SNORA64.4-201ENST00000516632 81 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 AC023157.2-201ENST00000540596 141 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 AC079598.5-201ENST00000547460 117 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 MIR3158-1-201ENST00000583596 81 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.95□□□□□ -1.94
VSX1Q9NZR4 SNRPGP20-201ENST00000604477 205 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 MIR376A1-201ENST00000616574 68 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
VSX1Q9NZR4 AC026241.1-201ENST00000517873 2142 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 AL049781.1-201ENST00000623195 3585 ntBASIC2.95□□□□□ -1.94
VSX1Q9NZR4 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.94□□□□□ -1.94
VSX1Q9NZR4 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
VSX1Q9NZR4 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
VSX1Q9NZR4 AC091564.4-201ENST00000533934 2194 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 AL109809.4-201ENST00000603520 2185 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.94□□□□□ -1.94
VSX1Q9NZR4 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.94□□□□□ -1.94
VSX1Q9NZR4 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.94□□□□□ -1.94
VSX1Q9NZR4 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.94□□□□□ -1.94
VSX1Q9NZR4 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.94□□□□□ -1.94
VSX1Q9NZR4 RNU1-70P-201ENST00000362618 164 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 Y_RNA.307-201ENST00000365022 117 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
VSX1Q9NZR4 RNU6-1145P-201ENST00000384246 107 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 RNU6-318P-201ENST00000384283 103 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 Y_RNA.512-201ENST00000384518 102 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 Y_RNA.562-201ENST00000384695 113 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 SNORD12B-201ENST00000410433 91 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 RNA5SP229-201ENST00000410809 99 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.94□□□□□ -1.94
VSX1Q9NZR4 AC112220.1-201ENST00000434628 355 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.94□□□□□ -1.94
VSX1Q9NZR4 RPL39P38-201ENST00000467018 153 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 RNU6-56P-201ENST00000516986 93 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 SCARNA20.6-201ENST00000517251 106 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.94□□□□□ -1.94
VSX1Q9NZR4 AC026470.2-201ENST00000561492 181 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.94□□□□□ -1.94
VSX1Q9NZR4 AC073410.2-201ENST00000603240 332 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.94□□□□□ -1.94
VSX1Q9NZR4 AC006133.1-201ENST00000617106 264 ntBASIC2.94□□□□□ -1.94
VSX1Q9NZR4 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
VSX1Q9NZR4 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.94□□□□□ -1.94
VSX1Q9NZR4 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
VSX1Q9NZR4 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.93□□□□□ -1.94
VSX1Q9NZR4 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
VSX1Q9NZR4 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.93□□□□□ -1.94
VSX1Q9NZR4 SNORD56.3-201ENST00000363507 71 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 RNU6-1210P-201ENST00000363775 107 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 Y_RNA.230-201ENST00000364348 109 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 RNU6-26P-201ENST00000383985 107 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 Y_RNA.447-201ENST00000384184 113 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 RNU1-57P-201ENST00000384491 166 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 Y_RNA.552-201ENST00000384665 112 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
VSX1Q9NZR4 PTMAP2-201ENST00000397627 327 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 MIR548H3-201ENST00000408771 118 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 WARS2P1-201ENST00000429678 537 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 AC007395.1-201ENST00000451333 677 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 RPL36AP48-201ENST00000485521 314 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 AC074133.1-201ENST00000515696 183 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 AK6P2-201ENST00000549020 471 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 AC027176.1-201ENST00000560204 514 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 MIR1254-2-201ENST00000579553 63 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 MIR4300-201ENST00000581016 96 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.93□□□□□ -1.94
VSX1Q9NZR4 AL078605.1-201ENST00000603529 500 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 AL034555.1-201ENST00000604816 211 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 RPL17P51-201ENST00000605218 238 ntBASIC2.93□□□□□ -1.94
VSX1Q9NZR4 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
VSX1Q9NZR4 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC2.93□□□□□ -1.94
VSX1Q9NZR4 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.93□□□□□ -1.94
VSX1Q9NZR4 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.92□□□□□ -1.94
VSX1Q9NZR4 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
VSX1Q9NZR4 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
VSX1Q9NZR4 Y_RNA.14-201ENST00000362415 103 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 RNU6-655P-201ENST00000362858 107 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 RNU6-379P-201ENST00000363813 104 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 5S_rRNA.1-201ENST00000364415 116 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 RNU6-1083P-201ENST00000384022 107 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 MIR329-1-201ENST00000385028 80 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 MT-TW-201ENST00000387382 68 ntBASIC2.92□□□□□ -1.94
VSX1Q9NZR4 RNU6-1093P-201ENST00000391194 107 ntBASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms