Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 UBE2V1P4-201ENST00000425374 344 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 Y_RNA.632-201ENST00000459189 102 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 MRPL42P6-201ENST00000486397 371 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 AC079140.5-201ENST00000507882 310 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 AC022634.1-201ENST00000520765 532 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 APOOP3-201ENST00000536787 586 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 IMMP1LP2-201ENST00000552954 492 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 FRG2DP-202ENST00000566967 323 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 AC007151.1-201ENST00000572774 483 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 AL356280.1-201ENST00000603614 379 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 AC091152.3-201ENST00000604227 325 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 AC113139.1-201ENST00000605049 239 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 Y_RNA.783-201ENST00000613546 102 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 SCARNA4-202ENST00000625402 129 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 MIR203B-201ENST00000636080 86 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.28□□□□□ -2.05
UPF3AQ9H1J1 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 RNU6-1059P-201ENST00000363752 98 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 RNU5E-7P-201ENST00000365290 117 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 Y_RNA.419-201ENST00000384041 102 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 RPS29P13-201ENST00000402041 169 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 RNU6-325P-201ENST00000411132 105 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 AL030996.1-201ENST00000411430 235 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 AF228730.4-201ENST00000421457 183 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 AL358075.3-201ENST00000426289 226 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 SNAP23P1-201ENST00000433229 246 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 AL645568.3-201ENST00000433683 316 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 AC107399.1-201ENST00000451226 265 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 AC026782.1-201ENST00000512952 449 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 Y_RNA.675-201ENST00000516389 149 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 RNU6-1213P-201ENST00000517075 94 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 AP004607.1-201ENST00000524456 203 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 NACAP3-201ENST00000552100 481 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 CPDP1-201ENST00000579660 283 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 AL050343.2-201ENST00000607338 280 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 AL161423.1-201ENST00000613700 262 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 AC098657.3-201ENST00000620434 263 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 AC097372.5-201ENST00000623665 376 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 MTND4LP32-201ENST00000636111 270 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 ZNF720P1-201ENST00000562403 1939 ntBASIC2.27□□□□□ -2.05
UPF3AQ9H1J1 ADAM3A-203ENST00000461344 2157 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 MTND4P23-201ENST00000447723 1363 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 MTND4P29-201ENST00000503122 1372 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 RNU6-105P-201ENST00000363909 104 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 RNU6-1317P-201ENST00000364582 104 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 RNU1-52P-201ENST00000384190 164 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 RPL37P10-201ENST00000412884 288 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 NCOR1P3-201ENST00000420479 303 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 AC004383.1-201ENST00000438135 289 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 AL161651.1-201ENST00000440882 223 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 RPS29P27-201ENST00000463711 170 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 AP001025.1-201ENST00000486139 332 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 ACA59.2-201ENST00000517061 156 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 SNORA31.23-201ENST00000517219 133 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 GLYCAM1-201ENST00000546596 285 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 AC110588.1-201ENST00000559699 137 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 AC009314.1-201ENST00000603871 304 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 MIR6128-201ENST00000615528 109 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.26□□□□□ -2.05
UPF3AQ9H1J1 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 RNU6-1280P-201ENST00000365211 107 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 Y_RNA.387-201ENST00000383918 102 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 Y_RNA.404-201ENST00000383978 102 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 RNU6-842P-201ENST00000384269 107 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 RNU6-370P-201ENST00000411008 104 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 AL139396.1-201ENST00000421137 167 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 USP9YP30-201ENST00000430729 455 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 Y_RNA.635-201ENST00000459041 101 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 SNORD19B-201ENST00000459623 84 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 MRPS36P2-201ENST00000512569 299 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 RNU6-559P-201ENST00000516151 98 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 Y_RNA.670-201ENST00000516255 105 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 IGLV3-17-201ENST00000519099 244 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 MIR5002-201ENST00000584713 97 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 226.7 ms