Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RNU6-461P-201ENST00000364195 107 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 RNU6-99P-201ENST00000364721 107 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 Y_RNA.445-201ENST00000384168 102 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 MIR208B-201ENST00000401172 77 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 CBX3P9-201ENST00000402326 552 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.14□□□□□ -1.91
NUP88Q99567 AC007098.1-201ENST00000420122 367 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 AC012306.1-201ENST00000423267 114 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 MTCO3P29-201ENST00000432119 779 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 MICF-203ENST00000432679 129 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.14□□□□□ -1.91
NUP88Q99567 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.14□□□□□ -1.91
NUP88Q99567 AF186996.7-201ENST00000492781 209 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 Y_RNA.701-201ENST00000516812 110 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 Y_RNA.706-201ENST00000516933 99 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 SNORA31.26-201ENST00000517250 137 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 AC004584.2-201ENST00000570407 410 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 MIR5571-201ENST00000577998 113 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 MIR3923-201ENST00000579521 83 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 AC023043.3-201ENST00000593113 385 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 AC044792.1-201ENST00000593294 196 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 AL080274.1-201ENST00000605565 220 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 SCARNA4-201ENST00000629045 128 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 AC243829.7-201ENST00000633081 225 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.14□□□□□ -1.91
NUP88Q99567 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
NUP88Q99567 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
NUP88Q99567 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
NUP88Q99567 RNU6-490P-201ENST00000362985 107 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 RNU6-1180P-201ENST00000364935 107 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 XGY1-201ENST00000381172 446 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 Y_RNA.394-201ENST00000383942 103 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 MIR32-201ENST00000384965 70 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 MIR627-201ENST00000384979 97 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 U6atac.2-201ENST00000408644 118 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC3.13□□□□□ -1.91
NUP88Q99567 Z82188.1-201ENST00000436709 154 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.13□□□□□ -1.91
NUP88Q99567 UBBP3-201ENST00000445497 241 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 AC007677.1-201ENST00000445757 515 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 snoU13.30-201ENST00000458951 104 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 RN7SL429P-201ENST00000479090 223 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 RN7SL489P-201ENST00000486185 223 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 RN7SL327P-201ENST00000488659 223 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.13□□□□□ -1.91
NUP88Q99567 RNA5SP76-201ENST00000516277 87 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 RNU6-1153P-201ENST00000516760 105 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.13□□□□□ -1.91
NUP88Q99567 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.13□□□□□ -1.91
NUP88Q99567 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.13□□□□□ -1.91
NUP88Q99567 RPL23AP88-201ENST00000605759 454 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 RN7SL853P-201ENST00000617250 223 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 AC137590.2-201ENST00000619709 240 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 MIR6733-201ENST00000635723 61 ntBASIC3.13□□□□□ -1.91
NUP88Q99567 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.13□□□□□ -1.91
NUP88Q99567 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.13□□□□□ -1.91
NUP88Q99567 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
NUP88Q99567 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.12□□□□□ -1.91
NUP88Q99567 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.12□□□□□ -1.91
NUP88Q99567 Y_RNA.314-201ENST00000365114 102 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 Y_RNA.405-201ENST00000383979 100 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 Y_RNA.451-201ENST00000384200 100 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 RNU6-301P-201ENST00000384277 107 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 Y_RNA.524-201ENST00000384564 100 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 Y_RNA.561-201ENST00000384694 100 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 SNORA26.3-201ENST00000391119 136 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 MTCYBP10-201ENST00000424905 650 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.12□□□□□ -1.91
NUP88Q99567 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.12□□□□□ -1.91
NUP88Q99567 RPS3P1-201ENST00000456781 192 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 RNU7-87P-201ENST00000459343 62 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 TOMM22P6-201ENST00000465035 409 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.12□□□□□ -1.91
NUP88Q99567 RNU6-699P-201ENST00000517081 110 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.12□□□□□ -1.91
NUP88Q99567 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.12□□□□□ -1.91
NUP88Q99567 CYP4A27P-201ENST00000567218 190 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 AL078605.1-201ENST00000603529 500 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 AC100812.1-201ENST00000607622 580 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 MIR1244-1-201ENST00000612829 85 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.12□□□□□ -1.91
NUP88Q99567 MIR1244-3-201ENST00000635744 85 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 MIR1244-2-201ENST00000636449 85 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 MIR1244-4-202ENST00000636813 85 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 AL450472.1-202ENST00000637286 180 ntBASIC3.12□□□□□ -1.91
NUP88Q99567 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
NUP88Q99567 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
NUP88Q99567 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
NUP88Q99567 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
NUP88Q99567 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
NUP88Q99567 RNU5B-2P-201ENST00000363036 113 ntBASIC3.11□□□□□ -1.91
NUP88Q99567 Y_RNA.197-201ENST00000364004 102 ntBASIC3.11□□□□□ -1.91
NUP88Q99567 SET-203ENST00000372688 801 ntTSL 2 BASIC3.11□□□□□ -1.91
NUP88Q99567 Y_RNA.428-201ENST00000384078 102 ntBASIC3.11□□□□□ -1.91
NUP88Q99567 RNU6-1032P-201ENST00000384100 107 ntBASIC3.11□□□□□ -1.91
NUP88Q99567 RNU6-1011P-201ENST00000384668 107 ntBASIC3.11□□□□□ -1.91
NUP88Q99567 RNU6-541P-201ENST00000384709 110 ntBASIC3.11□□□□□ -1.91
NUP88Q99567 FO393413.1-201ENST00000402892 195 ntBASIC3.11□□□□□ -1.91
NUP88Q99567 HMGB3P2-201ENST00000411913 584 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 144.5 ms