Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC-0.09□□□□□ -2.42
USF3Q68DE3 MIR4431-201ENST00000579990 94 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 BNIP3P26-201ENST00000600827 554 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 AC008759.3-201ENST00000613300 508 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 SCARNA4-202ENST00000625402 129 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 RNU4-9P-201ENST00000364951 139 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 RNU6-950P-201ENST00000384651 107 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 RNA5SP390-201ENST00000410191 113 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 RNU2-42P-201ENST00000410697 113 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 BX119904.4-201ENST00000424402 301 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC-0.1□□□□□ -2.43
USF3Q68DE3 RPL39P39-201ENST00000455840 151 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 HMGB1P29-201ENST00000505659 499 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 AC093809.1-201ENST00000509155 340 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 SNORA31.3-201ENST00000516029 96 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 AC098483.2-201ENST00000603158 454 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 RAC1P9-201ENST00000604990 392 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 AL356157.2-201ENST00000605122 111 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 MTND5P16-201ENST00000460269 1703 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 RNU4-45P-201ENST00000365469 141 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 MIR1185-1-201ENST00000408598 86 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 RNA5SP504-201ENST00000410676 117 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 RNU6-1245P-201ENST00000411130 106 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC-0.1□□□□□ -2.43
USF3Q68DE3 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC-0.1□□□□□ -2.43
USF3Q68DE3 AC013262.1-201ENST00000426710 252 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 AL627311.1-201ENST00000431514 115 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC-0.1□□□□□ -2.43
USF3Q68DE3 MTCO2P7-201ENST00000446518 666 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 HGF-207ENST00000453018 721 ntTSL 3 BASIC-0.1□□□□□ -2.43
USF3Q68DE3 SRRM1P2-201ENST00000464531 1192 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 HMGN1P12-201ENST00000499125 195 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC-0.1□□□□□ -2.43
USF3Q68DE3 MTATP6P9-201ENST00000515039 680 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 AC022861.1-201ENST00000522981 663 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 AP003049.1-201ENST00000529418 457 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.1□□□□□ -2.43
USF3Q68DE3 AL357312.1-201ENST00000603879 298 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 AL353149.1-201ENST00000610667 244 ntBASIC-0.1□□□□□ -2.43
USF3Q68DE3 MIR103A2-201ENST00000362154 78 ntBASIC-0.11□□□□□ -2.43
USF3Q68DE3 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC-0.11□□□□□ -2.43
USF3Q68DE3 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC-0.11□□□□□ -2.43
USF3Q68DE3 AC002429.1-201ENST00000437672 148 ntBASIC-0.11□□□□□ -2.43
USF3Q68DE3 AC005094.1-201ENST00000440420 368 ntBASIC-0.11□□□□□ -2.43
USF3Q68DE3 RNU6-922P-201ENST00000516753 99 ntBASIC-0.11□□□□□ -2.43
USF3Q68DE3 MTND4LP26-201ENST00000518144 282 ntBASIC-0.11□□□□□ -2.43
USF3Q68DE3 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC-0.11□□□□□ -2.43
USF3Q68DE3 AF038458.1-201ENST00000588406 262 ntBASIC-0.11□□□□□ -2.43
USF3Q68DE3 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC-0.11□□□□□ -2.43
USF3Q68DE3 AC092634.7-201ENST00000621022 103 ntBASIC-0.11□□□□□ -2.43
USF3Q68DE3 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC-0.11□□□□□ -2.43
USF3Q68DE3 AL078595.3-201ENST00000623815 1166 ntBASIC-0.11□□□□□ -2.43
USF3Q68DE3 snoU2-30.2-201ENST00000362805 70 ntBASIC-0.11□□□□□ -2.43
USF3Q68DE3 RNU6-877P-201ENST00000383868 107 ntBASIC-0.11□□□□□ -2.43
USF3Q68DE3 RNU6V-201ENST00000384105 107 ntBASIC-0.11□□□□□ -2.43
USF3Q68DE3 MIR217-201ENST00000384817 110 ntBASIC-0.11□□□□□ -2.43
USF3Q68DE3 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC-0.11□□□□□ -2.43
USF3Q68DE3 EEF1E1P1-201ENST00000446998 430 ntBASIC-0.11□□□□□ -2.43
USF3Q68DE3 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC-0.11□□□□□ -2.43
USF3Q68DE3 AC022523.2-201ENST00000561045 150 ntBASIC-0.11□□□□□ -2.43
USF3Q68DE3 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC-0.11□□□□□ -2.43
USF3Q68DE3 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC-0.11□□□□□ -2.43
USF3Q68DE3 ZNF736P9Y-201ENST00000439586 1345 ntBASIC-0.12□□□□□ -2.43
USF3Q68DE3 Y_RNA.551-201ENST00000384661 102 ntBASIC-0.12□□□□□ -2.43
USF3Q68DE3 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.12□□□□□ -2.43
USF3Q68DE3 MIR604-201ENST00000384880 94 ntBASIC-0.12□□□□□ -2.43
USF3Q68DE3 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.12□□□□□ -2.43
USF3Q68DE3 AL121578.1-201ENST00000428051 892 ntBASIC-0.12□□□□□ -2.43
USF3Q68DE3 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC-0.12□□□□□ -2.43
USF3Q68DE3 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC-0.12□□□□□ -2.43
USF3Q68DE3 RPL23AP50-201ENST00000434149 455 ntBASIC-0.12□□□□□ -2.43
USF3Q68DE3 HMGN2P34-201ENST00000437647 269 ntBASIC-0.12□□□□□ -2.43
USF3Q68DE3 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC-0.12□□□□□ -2.43
USF3Q68DE3 TMEM251P1-201ENST00000503717 318 ntBASIC-0.12□□□□□ -2.43
USF3Q68DE3 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC-0.12□□□□□ -2.43
USF3Q68DE3 AC078795.2-201ENST00000602835 1252 ntBASIC-0.12□□□□□ -2.43
USF3Q68DE3 AC005332.6-201ENST00000613178 446 ntBASIC-0.12□□□□□ -2.43
USF3Q68DE3 AL357080.1-201ENST00000617394 239 ntBASIC-0.12□□□□□ -2.43
USF3Q68DE3 AC253576.2-201ENST00000618815 580 ntBASIC-0.12□□□□□ -2.43
USF3Q68DE3 MIR340-201ENST00000362125 95 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 MIR520F-201ENST00000384824 87 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 RNA5SP496-201ENST00000391240 109 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 AC123900.1-201ENST00000420390 96 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC-0.13□□□□□ -2.43
USF3Q68DE3 AL590623.1-201ENST00000427864 105 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 MRPL42P4-201ENST00000453267 443 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 AC245047.8-201ENST00000456455 284 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 AC022364.2-201ENST00000457963 554 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 AP000797.1-201ENST00000478870 387 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC-0.13□□□□□ -2.43
USF3Q68DE3 RNU6-863P-201ENST00000515989 104 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 SNORA70.12-201ENST00000516084 153 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC-0.13□□□□□ -2.43
USF3Q68DE3 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC-0.13□□□□□ -2.43
USF3Q68DE3 AL136363.2-201ENST00000604173 851 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC-0.13□□□□□ -2.43
USF3Q68DE3 TUG1_2.1-201ENST00000614234 87 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.13□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms