Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AP000705.1-201ENST00000454567 350 ntBASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 RPS29P27-201ENST00000463711 170 ntBASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 AL121594.1-201ENST00000475906 575 ntBASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 AC090525.1-201ENST00000479116 478 ntBASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 ACA59.1-201ENST00000515966 143 ntBASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 RNU6-1213P-201ENST00000517075 94 ntBASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 AC105029.1-201ENST00000520250 669 ntBASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 MRPS36P4-201ENST00000534436 298 ntBASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 SNORD98-201ENST00000636377 67 ntBASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
PDLIM3Q53GG5 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 Y_RNA.2-201ENST00000362330 96 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 RNA5SP125-201ENST00000364843 120 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 RNU6-867P-201ENST00000364956 107 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 RNU6-601P-201ENST00000384540 107 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 RNA5SP425-201ENST00000410336 112 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 AP000275.1-201ENST00000411943 390 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 Z98742.3-201ENST00000418637 326 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 AL353752.1-201ENST00000454946 260 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 RNU5F-2P-201ENST00000516066 82 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 CBX3P7-201ENST00000532876 502 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 MIR4273-201ENST00000582824 84 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 AC078795.3-201ENST00000602913 472 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 AC018889.1-201ENST00000605372 397 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 MIR8076-201ENST00000611401 83 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 MIR6895-201ENST00000613497 78 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 AC092608.2-201ENST00000624427 218 ntBASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.2□□□□□ -2.06
PDLIM3Q53GG5 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 RNU1-72P-201ENST00000362976 153 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 Y_RNA.166-201ENST00000363730 102 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 RNU6-1210P-201ENST00000363775 107 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 SNORA3A-201ENST00000364113 130 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 RNU6-1141P-201ENST00000364520 107 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 RNU5E-4P-201ENST00000364931 120 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 Y_RNA.529-201ENST00000384586 119 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 HMGN2P3-201ENST00000433603 273 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 HMGN2P5-201ENST00000436882 273 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 RPS3P1-201ENST00000456781 192 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 snoU13.6-201ENST00000458785 104 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 AC104564.1-201ENST00000493028 407 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 AC114801.2-201ENST00000503825 781 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 AC109446.1-201ENST00000566172 220 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 RPS3AP23-202ENST00000574601 686 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 CPDP1-201ENST00000579660 283 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 AC060766.3-201ENST00000591442 263 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 VN1R107P-201ENST00000601784 209 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 AL356575.1-201ENST00000603008 283 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 AC112487.2-201ENST00000637950 304 ntBASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
PDLIM3Q53GG5 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 U8.8-201ENST00000365399 135 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 RN7SKP158-201ENST00000410453 326 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 RNU6-370P-201ENST00000411008 104 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 RPL23AP36-201ENST00000413895 458 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 AL135786.1-201ENST00000415892 214 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 AIMP1P2-201ENST00000425294 312 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 RPL7P42-201ENST00000481005 679 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 RPL30P1-201ENST00000488676 339 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 SRIP1-201ENST00000489235 288 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 AC016632.1-201ENST00000503994 196 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 AC116337.1-201ENST00000509680 687 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 165.5 ms