Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU6-142P-201ENST00000384019 107 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 AL591034.2-201ENST00000402839 359 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 EIF4EP2-201ENST00000422816 654 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.52□□□□□ -2.01
COL28A1Q2UY09 HMGN2P23-201ENST00000456759 269 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 AC104564.1-201ENST00000493028 407 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 HMGB1P35-201ENST00000503360 598 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 AC091874.1-201ENST00000511402 339 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.52□□□□□ -2.01
COL28A1Q2UY09 SNORA9.3-201ENST00000516383 129 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.52□□□□□ -2.01
COL28A1Q2UY09 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.52□□□□□ -2.01
COL28A1Q2UY09 FGF7P1-201ENST00000582820 288 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 MIR3605-201ENST00000583214 100 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 AC060766.3-201ENST00000591442 263 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 RPL30P11-203ENST00000598995 310 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 AC243960.4-201ENST00000600532 288 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 AL713866.2-201ENST00000603579 219 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 MIR6128-201ENST00000615528 109 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.52□□□□□ -2.01
COL28A1Q2UY09 MIR5739-201ENST00000619803 80 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 AC098657.3-201ENST00000620434 263 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 SNORA43.4-201ENST00000629559 138 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 AL450472.1-202ENST00000637286 180 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.51□□□□□ -2.01
COL28A1Q2UY09 RNU6-1159P-201ENST00000362933 107 ntBASIC2.51□□□□□ -2.01
COL28A1Q2UY09 DEFA7P-201ENST00000382676 285 ntBASIC2.51□□□□□ -2.01
COL28A1Q2UY09 Y_RNA.474-201ENST00000384341 102 ntBASIC2.51□□□□□ -2.01
COL28A1Q2UY09 MIR521-1-201ENST00000384902 87 ntBASIC2.51□□□□□ -2.01
COL28A1Q2UY09 RPL23AP36-201ENST00000413895 458 ntBASIC2.51□□□□□ -2.01
COL28A1Q2UY09 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.51□□□□□ -2.01
COL28A1Q2UY09 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.51□□□□□ -2.01
COL28A1Q2UY09 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.51□□□□□ -2.01
COL28A1Q2UY09 AC073901.1-201ENST00000462471 408 ntBASIC2.51□□□□□ -2.01
COL28A1Q2UY09 AC103975.1-201ENST00000482506 483 ntBASIC2.51□□□□□ -2.01
COL28A1Q2UY09 AC021231.3-201ENST00000558497 370 ntBASIC2.51□□□□□ -2.01
COL28A1Q2UY09 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.51□□□□□ -2.01
COL28A1Q2UY09 AC018462.2-201ENST00000605375 395 ntBASIC2.51□□□□□ -2.01
COL28A1Q2UY09 MIR3976-201ENST00000606807 139 ntBASIC2.51□□□□□ -2.01
COL28A1Q2UY09 AC009994.1-201ENST00000606889 253 ntBASIC2.51□□□□□ -2.01
COL28A1Q2UY09 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.51□□□□□ -2.01
COL28A1Q2UY09 AC009233.1-201ENST00000616477 371 ntBASIC2.51□□□□□ -2.01
COL28A1Q2UY09 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
COL28A1Q2UY09 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.51□□□□□ -2.01
COL28A1Q2UY09 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.51□□□□□ -2.01
COL28A1Q2UY09 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
COL28A1Q2UY09 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
COL28A1Q2UY09 RNU6-174P-201ENST00000410406 106 ntBASIC2.5□□□□□ -2.01
COL28A1Q2UY09 AC104389.3-201ENST00000445629 235 ntBASIC2.5□□□□□ -2.01
COL28A1Q2UY09 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.5□□□□□ -2.01
COL28A1Q2UY09 CYP2C59P-201ENST00000457790 269 ntBASIC2.5□□□□□ -2.01
COL28A1Q2UY09 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.5□□□□□ -2.01
COL28A1Q2UY09 Y_RNA.635-201ENST00000459041 101 ntBASIC2.5□□□□□ -2.01
COL28A1Q2UY09 RNU6-567P-201ENST00000516746 107 ntBASIC2.5□□□□□ -2.01
COL28A1Q2UY09 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.5□□□□□ -2.01
COL28A1Q2UY09 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.5□□□□□ -2.01
COL28A1Q2UY09 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.5□□□□□ -2.01
COL28A1Q2UY09 AC023824.2-201ENST00000566185 400 ntBASIC2.5□□□□□ -2.01
COL28A1Q2UY09 AC093249.1-201ENST00000567049 203 ntBASIC2.5□□□□□ -2.01
COL28A1Q2UY09 AL034555.1-201ENST00000604816 211 ntBASIC2.5□□□□□ -2.01
COL28A1Q2UY09 AL132765.2-201ENST00000610812 351 ntBASIC2.5□□□□□ -2.01
COL28A1Q2UY09 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.5□□□□□ -2.01
COL28A1Q2UY09 SNORD98-201ENST00000636377 67 ntBASIC2.5□□□□□ -2.01
COL28A1Q2UY09 AC135776.4-201ENST00000624300 1904 ntBASIC2.5□□□□□ -2.01
COL28A1Q2UY09 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
COL28A1Q2UY09 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.49□□□□□ -2.01
COL28A1Q2UY09 MIR6073-201ENST00000352083 89 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 SNORD50.1-201ENST00000362987 71 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 Y_RNA.123-201ENST00000363338 102 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 U3.13-201ENST00000364804 214 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 RNA5SP240-201ENST00000365355 128 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 RNU6-1286P-201ENST00000383871 107 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 RNU6-601P-201ENST00000384540 107 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 RNU6-306P-201ENST00000384617 107 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 MIR29B2-201ENST00000385055 81 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
COL28A1Q2UY09 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
COL28A1Q2UY09 RNU2-41P-201ENST00000410991 178 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.49□□□□□ -2.01
COL28A1Q2UY09 AC093019.1-201ENST00000443135 252 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 AC245517.4-201ENST00000448601 281 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.49□□□□□ -2.01
COL28A1Q2UY09 AC140059.1-201ENST00000489238 361 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.49□□□□□ -2.01
COL28A1Q2UY09 AC026782.1-201ENST00000512952 449 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 AC108729.3-201ENST00000513484 108 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 RNU6-507P-201ENST00000516045 100 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.49□□□□□ -2.01
COL28A1Q2UY09 AC007375.1-201ENST00000554513 578 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 AC113139.1-201ENST00000605049 239 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 AC009318.2-201ENST00000610917 651 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
COL28A1Q2UY09 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
COL28A1Q2UY09 ZNF271P-202ENST00000465539 1970 ntBASIC2.49□□□□□ -2.01
COL28A1Q2UY09 RNU4-56P-201ENST00000364700 142 ntBASIC2.48□□□□□ -2.01
COL28A1Q2UY09 Y_RNA.504-201ENST00000384481 104 ntBASIC2.48□□□□□ -2.01
COL28A1Q2UY09 RNU2-63P-201ENST00000410792 194 ntBASIC2.48□□□□□ -2.01
COL28A1Q2UY09 AL590135.1-201ENST00000422215 156 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms