Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 MED13P1-201ENST00000428342 171 ntBASIC0.84□□□□□ -2.28
SCN9AQ15858 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC0.84□□□□□ -2.28
SCN9AQ15858 MTCO1P44-201ENST00000441935 243 ntBASIC0.84□□□□□ -2.28
SCN9AQ15858 RPL30P7-201ENST00000479312 323 ntBASIC0.84□□□□□ -2.28
SCN9AQ15858 AC103851.1-201ENST00000506833 274 ntBASIC0.84□□□□□ -2.28
SCN9AQ15858 MIR4711-201ENST00000578274 70 ntBASIC0.84□□□□□ -2.28
SCN9AQ15858 MIR3923-201ENST00000579521 83 ntBASIC0.84□□□□□ -2.28
SCN9AQ15858 AC012507.3-201ENST00000603556 477 ntBASIC0.84□□□□□ -2.28
SCN9AQ15858 AL031281.1-201ENST00000604049 488 ntBASIC0.84□□□□□ -2.28
SCN9AQ15858 AC005014.3-201ENST00000605985 190 ntBASIC0.84□□□□□ -2.28
SCN9AQ15858 AL355802.3-201ENST00000607571 545 ntBASIC0.84□□□□□ -2.28
SCN9AQ15858 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.84□□□□□ -2.28
SCN9AQ15858 RMST_7.1-201ENST00000621935 268 ntBASIC0.84□□□□□ -2.28
SCN9AQ15858 RNU5F-6P-201ENST00000362979 116 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 RNU6-23P-201ENST00000363283 107 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 RNU6-743P-201ENST00000364151 106 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 RNU6-1029P-201ENST00000384109 107 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 RNU6-809P-201ENST00000384461 107 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 MIR508-201ENST00000384857 115 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 RNU6-1176P-201ENST00000390955 107 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 RNA5SP201-201ENST00000410316 124 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 RPL23AP95-201ENST00000426806 265 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC0.83□□□□□ -2.28
SCN9AQ15858 MTND2P4-201ENST00000445034 1004 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 AC013470.1-201ENST00000453438 462 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 AC130509.1-201ENST00000464158 433 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC0.83□□□□□ -2.28
SCN9AQ15858 RNU6-377P-201ENST00000515965 102 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 RAB11AP2-201ENST00000545905 639 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 TMF1P1-201ENST00000576058 373 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 AL590095.2-201ENST00000604136 117 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 AC069114.2-201ENST00000604699 304 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 AL356157.2-201ENST00000605122 111 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 AL590240.4-201ENST00000616908 390 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 Z69720.2-201ENST00000624755 279 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 AC095038.3-201ENST00000634439 195 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 AC100821.1-201ENST00000523153 2479 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 MIR330-201ENST00000362196 94 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 Y_RNA.30-201ENST00000362572 97 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 RNU6-112P-201ENST00000363599 104 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 Y_RNA.576-201ENST00000384781 102 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 Y_RNA.598-201ENST00000410480 95 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 MTATP6P19-201ENST00000413797 659 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 MTND1P30-201ENST00000441241 901 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 AL009048.1-201ENST00000450437 298 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 DUXAP8-207ENST00000456786 622 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 RNU5F-4P-201ENST00000516581 114 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 RNU6-685P-201ENST00000517088 95 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.83□□□□□ -2.28
SCN9AQ15858 ZNF519P3-201ENST00000557158 1032 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 HMGB1P33-201ENST00000563485 527 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC0.83□□□□□ -2.28
SCN9AQ15858 AC105148.1-201ENST00000604961 409 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 MIR7844-201ENST00000616161 122 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 AL078595.3-201ENST00000623815 1166 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.83□□□□□ -2.28
SCN9AQ15858 AL157786.1-207ENST00000627771 695 ntBASIC0.83□□□□□ -2.28
SCN9AQ15858 RNU4-15P-201ENST00000362613 141 ntBASIC0.82□□□□□ -2.28
SCN9AQ15858 SNORA70.7-201ENST00000384159 133 ntBASIC0.82□□□□□ -2.28
SCN9AQ15858 RNU6-925P-201ENST00000384629 104 ntBASIC0.82□□□□□ -2.28
SCN9AQ15858 Y_RNA.608-201ENST00000410647 95 ntBASIC0.82□□□□□ -2.28
SCN9AQ15858 AC078809.1-201ENST00000427601 140 ntBASIC0.82□□□□□ -2.28
SCN9AQ15858 TOMM22P2-201ENST00000430735 237 ntBASIC0.82□□□□□ -2.28
SCN9AQ15858 GPR143P-201ENST00000434155 205 ntBASIC0.82□□□□□ -2.28
SCN9AQ15858 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.82□□□□□ -2.28
SCN9AQ15858 AC021146.2-201ENST00000504736 556 ntBASIC0.82□□□□□ -2.28
SCN9AQ15858 RNU6-410P-201ENST00000517006 107 ntBASIC0.82□□□□□ -2.28
SCN9AQ15858 RNU6-902P-201ENST00000517212 91 ntBASIC0.82□□□□□ -2.28
SCN9AQ15858 AP003072.2-201ENST00000527756 676 ntBASIC0.82□□□□□ -2.28
SCN9AQ15858 AL356057.1-201ENST00000533798 831 ntBASIC0.82□□□□□ -2.28
SCN9AQ15858 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC0.82□□□□□ -2.28
SCN9AQ15858 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.82□□□□□ -2.28
SCN9AQ15858 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC0.82□□□□□ -2.28
SCN9AQ15858 MTCO2P2-201ENST00000591258 225 ntBASIC0.82□□□□□ -2.28
SCN9AQ15858 Z99289.3-201ENST00000605586 594 ntBASIC0.82□□□□□ -2.28
SCN9AQ15858 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
SCN9AQ15858 MIR8065-201ENST00000620577 100 ntBASIC0.82□□□□□ -2.28
SCN9AQ15858 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.82□□□□□ -2.28
SCN9AQ15858 SNORA22-201ENST00000383907 134 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 SNORA22C-201ENST00000384614 134 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.81□□□□□ -2.28
SCN9AQ15858 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.81□□□□□ -2.28
SCN9AQ15858 HSFY7P-201ENST00000432672 318 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 HSFY8P-201ENST00000437934 318 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 JTBP1-201ENST00000441314 247 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 HSFY5P-201ENST00000453726 309 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 AL122001.1-201ENST00000457027 370 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 snoU13.27-201ENST00000459278 104 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.81□□□□□ -2.28
SCN9AQ15858 AC022447.4-201ENST00000504053 364 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 MTCO3P7-201ENST00000510008 774 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 RNA5SP337-201ENST00000517007 109 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.81□□□□□ -2.28
SCN9AQ15858 CYCSP23-201ENST00000519781 313 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC0.81□□□□□ -2.28
SCN9AQ15858 AP002453.2-201ENST00000533503 320 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 MIR1273G-201ENST00000577677 100 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 AC008752.3-201ENST00000588113 712 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms