Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC091805.2-201ENST00000603848 235 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 AC025449.1-201ENST00000603896 529 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 PRR13P7-201ENST00000605538 430 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 AP000654.2-201ENST00000605633 586 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 AC002044.1-201ENST00000606707 158 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 SRP54-214ENST00000630962 162 ntTSL 5 BASIC1.11□□□□□ -2.23
FOXA1P55317 AL390237.1-201ENST00000404226 1415 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 RNU6-23P-201ENST00000363283 107 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 RNA5SP493-201ENST00000364115 91 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 RNU6-142P-201ENST00000384019 107 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 RNU6-160P-201ENST00000384591 107 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 RNU6-606P-201ENST00000384721 111 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 RPS29P13-201ENST00000402041 169 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 AL357139.1-201ENST00000407792 426 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.1□□□□□ -2.23
FOXA1P55317 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.1□□□□□ -2.23
FOXA1P55317 AL117339.3-201ENST00000418733 162 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 AL590135.1-201ENST00000422215 156 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 AC019205.3-201ENST00000424573 156 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.1□□□□□ -2.23
FOXA1P55317 AC016700.2-201ENST00000446011 156 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 AL031274.1-201ENST00000450334 232 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 HMGN2P18-201ENST00000450680 270 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 MTND1P27-201ENST00000451117 902 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 C1DP4-201ENST00000455429 424 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 RNU6-333P-201ENST00000459117 107 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.1□□□□□ -2.23
FOXA1P55317 RPL36AP21-201ENST00000490372 323 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.1□□□□□ -2.23
FOXA1P55317 AC015911.1-201ENST00000495111 156 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.1□□□□□ -2.23
FOXA1P55317 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC1.1□□□□□ -2.23
FOXA1P55317 FAM206BP-201ENST00000510179 541 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 RNVU1-2-201ENST00000516326 135 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 RNA5SP490-201ENST00000517141 136 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC1.1□□□□□ -2.23
FOXA1P55317 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.1□□□□□ -2.23
FOXA1P55317 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC1.1□□□□□ -2.23
FOXA1P55317 SUB1P2-201ENST00000556401 297 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.1□□□□□ -2.23
FOXA1P55317 AGGF1P4-201ENST00000568249 801 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 MIR3169-201ENST00000578032 83 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 MIR3136-201ENST00000583498 78 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 AC040904.1-201ENST00000590850 223 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 RSL24D1P11-201ENST00000591045 491 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.1□□□□□ -2.23
FOXA1P55317 AC110760.3-201ENST00000598794 467 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
FOXA1P55317 AL590240.4-201ENST00000616908 390 ntBASIC1.1□□□□□ -2.23
FOXA1P55317 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
FOXA1P55317 AP000560.1-201ENST00000624150 1937 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 RNU6-266P-201ENST00000364225 107 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 SNORD114-6-201ENST00000364393 72 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 SNORD32A-201ENST00000364805 84 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 Y_RNA.355-201ENST00000365462 98 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 SNORA48.1-201ENST00000390879 135 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 MTCO2P11-201ENST00000431069 680 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 AL358934.1-201ENST00000432346 324 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 SNAP23P1-201ENST00000433229 246 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.09□□□□□ -2.23
FOXA1P55317 AL035666.1-201ENST00000446195 348 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 AC132479.1-201ENST00000449160 144 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 GMFBP1-201ENST00000467831 427 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC1.09□□□□□ -2.23
FOXA1P55317 AC098862.1-201ENST00000504991 413 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 COPS8P3-201ENST00000526024 482 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 AC103996.1-201ENST00000555468 102 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 MTCO3P23-201ENST00000561363 289 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.09□□□□□ -2.23
FOXA1P55317 VN1R107P-201ENST00000601784 209 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 AL157834.3-201ENST00000615543 103 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 AC072046.2-201ENST00000618366 268 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 AC136475.10-201ENST00000620253 385 ntBASIC1.09□□□□□ -2.23
FOXA1P55317 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.09□□□□□ -2.23
FOXA1P55317 ZNF680P1-201ENST00000436625 1469 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 CBX3P1-201ENST00000325243 554 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 RNU6-827P-201ENST00000365553 106 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.08□□□□□ -2.24
FOXA1P55317 RNU6-26P-201ENST00000383985 107 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 MIR30A-201ENST00000385092 71 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 MTCYBP2-201ENST00000407745 171 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 MIR1276-201ENST00000408707 83 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 RNU2-29P-201ENST00000410423 189 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 RNA5SP100-201ENST00000410903 110 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 RNA5SP59-201ENST00000410922 110 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.08□□□□□ -2.24
FOXA1P55317 RPS6P15-201ENST00000431996 751 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC1.08□□□□□ -2.24
FOXA1P55317 MTND4P32-201ENST00000437189 1237 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.08□□□□□ -2.24
FOXA1P55317 OFD1P4Y-201ENST00000455273 1179 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 RPL31P58-201ENST00000469001 379 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.08□□□□□ -2.24
FOXA1P55317 HMGN1P7-201ENST00000491722 313 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC1.08□□□□□ -2.24
FOXA1P55317 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 RNU6-430P-201ENST00000517078 107 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 172.2 ms