Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 COX6CP14-201ENST00000469580 174 ntBASIC3.82□□□□□ -1.8
LIG3P49916 Y_RNA.679-201ENST00000516416 91 ntBASIC3.82□□□□□ -1.8
LIG3P49916 RNA5SP164-201ENST00000516533 110 ntBASIC3.82□□□□□ -1.8
LIG3P49916 AC093331.1-201ENST00000521474 169 ntBASIC3.82□□□□□ -1.8
LIG3P49916 TGIF1P1-201ENST00000558095 802 ntBASIC3.82□□□□□ -1.8
LIG3P49916 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC3.82□□□□□ -1.8
LIG3P49916 PCGEM1.1-201ENST00000613431 131 ntBASIC3.82□□□□□ -1.8
LIG3P49916 AL121772.2-201ENST00000614331 297 ntBASIC3.82□□□□□ -1.8
LIG3P49916 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
LIG3P49916 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LIG3P49916 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.82□□□□□ -1.8
LIG3P49916 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LIG3P49916 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
LIG3P49916 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
LIG3P49916 UBE2WP1-201ENST00000362030 340 ntBASIC3.81□□□□□ -1.8
LIG3P49916 RNU6-655P-201ENST00000362858 107 ntBASIC3.81□□□□□ -1.8
LIG3P49916 RNU6-1210P-201ENST00000363775 107 ntBASIC3.81□□□□□ -1.8
LIG3P49916 SNORA62.3-201ENST00000365110 153 ntBASIC3.81□□□□□ -1.8
LIG3P49916 Y_RNA.418-201ENST00000384029 102 ntBASIC3.81□□□□□ -1.8
LIG3P49916 RNU6-1310P-201ENST00000384153 107 ntBASIC3.81□□□□□ -1.8
LIG3P49916 U8.11-201ENST00000384699 133 ntBASIC3.81□□□□□ -1.8
LIG3P49916 U8.12-201ENST00000384701 133 ntBASIC3.81□□□□□ -1.8
LIG3P49916 MIR186-201ENST00000384988 86 ntBASIC3.81□□□□□ -1.8
LIG3P49916 SNORA48.7-201ENST00000391302 135 ntBASIC3.81□□□□□ -1.8
LIG3P49916 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
LIG3P49916 RNA5SP201-201ENST00000410316 124 ntBASIC3.81□□□□□ -1.8
LIG3P49916 RNU2-61P-201ENST00000411069 191 ntBASIC3.81□□□□□ -1.8
LIG3P49916 RNU4-61P-201ENST00000411243 107 ntBASIC3.81□□□□□ -1.8
LIG3P49916 AL139247.1-201ENST00000422768 325 ntBASIC3.81□□□□□ -1.8
LIG3P49916 AC104332.1-201ENST00000440471 797 ntBASIC3.81□□□□□ -1.8
LIG3P49916 U8.18-201ENST00000459285 133 ntBASIC3.81□□□□□ -1.8
LIG3P49916 SNORA67.7-201ENST00000516664 135 ntBASIC3.81□□□□□ -1.8
LIG3P49916 AC024405.2-202ENST00000532731 184 ntBASIC3.81□□□□□ -1.8
LIG3P49916 CBX3P4-201ENST00000538909 354 ntBASIC3.81□□□□□ -1.8
LIG3P49916 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.81□□□□□ -1.8
LIG3P49916 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC3.81□□□□□ -1.8
LIG3P49916 CR392039.5-201ENST00000623201 510 ntBASIC3.81□□□□□ -1.8
LIG3P49916 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.81□□□□□ -1.8
LIG3P49916 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
LIG3P49916 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LIG3P49916 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
LIG3P49916 RNA5SP124-201ENST00000362739 110 ntBASIC3.8□□□□□ -1.8
LIG3P49916 Y_RNA.122-201ENST00000363331 96 ntBASIC3.8□□□□□ -1.8
LIG3P49916 RNU1-105P-201ENST00000363470 161 ntBASIC3.8□□□□□ -1.8
LIG3P49916 RNU6-727P-201ENST00000363592 107 ntBASIC3.8□□□□□ -1.8
LIG3P49916 RNU1-57P-201ENST00000384491 166 ntBASIC3.8□□□□□ -1.8
LIG3P49916 MIR767-201ENST00000390228 109 ntBASIC3.8□□□□□ -1.8
LIG3P49916 PTMAP2-201ENST00000397627 327 ntBASIC3.8□□□□□ -1.8
LIG3P49916 Y_RNA.626-201ENST00000411288 95 ntBASIC3.8□□□□□ -1.8
LIG3P49916 RPL19P1-201ENST00000411635 428 ntBASIC3.8□□□□□ -1.8
LIG3P49916 ELOCP21-201ENST00000412558 336 ntBASIC3.8□□□□□ -1.8
LIG3P49916 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.8□□□□□ -1.8
LIG3P49916 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.8□□□□□ -1.8
LIG3P49916 AC112771.1-201ENST00000463581 102 ntBASIC3.8□□□□□ -1.8
LIG3P49916 SNORA27.4-201ENST00000516650 95 ntBASIC3.8□□□□□ -1.8
LIG3P49916 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC3.8□□□□□ -1.8
LIG3P49916 EIF4A1P12-201ENST00000551910 141 ntBASIC3.8□□□□□ -1.8
LIG3P49916 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.8□□□□□ -1.8
LIG3P49916 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.8□□□□□ -1.8
LIG3P49916 AC055872.1-201ENST00000570978 278 ntBASIC3.8□□□□□ -1.8
LIG3P49916 MIR3158-1-201ENST00000583596 81 ntBASIC3.8□□□□□ -1.8
LIG3P49916 Z83818.1-201ENST00000603584 150 ntBASIC3.8□□□□□ -1.8
LIG3P49916 uc_338.14-201ENST00000613162 166 ntBASIC3.8□□□□□ -1.8
LIG3P49916 AC006133.1-201ENST00000617106 264 ntBASIC3.8□□□□□ -1.8
LIG3P49916 AC039056.2-201ENST00000622261 511 ntBASIC3.8□□□□□ -1.8
LIG3P49916 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.8□□□□□ -1.8
LIG3P49916 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LIG3P49916 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
LIG3P49916 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.79□□□□□ -1.8
LIG3P49916 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
LIG3P49916 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LIG3P49916 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LIG3P49916 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
LIG3P49916 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LIG3P49916 MIR30E-201ENST00000362104 92 ntBASIC3.79□□□□□ -1.8
LIG3P49916 Y_RNA.82-201ENST00000363000 102 ntBASIC3.79□□□□□ -1.8
LIG3P49916 Y_RNA.92-201ENST00000363043 102 ntBASIC3.79□□□□□ -1.8
LIG3P49916 U3.9-201ENST00000363823 204 ntBASIC3.79□□□□□ -1.8
LIG3P49916 Y_RNA.235-201ENST00000364412 102 ntBASIC3.79□□□□□ -1.8
LIG3P49916 Y_RNA.292-201ENST00000364904 97 ntBASIC3.79□□□□□ -1.8
LIG3P49916 Y_RNA.306-201ENST00000365015 102 ntBASIC3.79□□□□□ -1.8
LIG3P49916 Y_RNA.312-201ENST00000365089 102 ntBASIC3.79□□□□□ -1.8
LIG3P49916 Y_RNA.322-201ENST00000365151 102 ntBASIC3.79□□□□□ -1.8
LIG3P49916 AL359837.1-201ENST00000381357 287 ntBASIC3.79□□□□□ -1.8
LIG3P49916 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
LIG3P49916 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
LIG3P49916 AL365496.1-201ENST00000426885 215 ntBASIC3.79□□□□□ -1.8
LIG3P49916 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.79□□□□□ -1.8
LIG3P49916 RPS3P1-201ENST00000456781 192 ntBASIC3.79□□□□□ -1.8
LIG3P49916 Y_RNA.650-201ENST00000459002 102 ntBASIC3.79□□□□□ -1.8
LIG3P49916 AL133162.1-201ENST00000463228 453 ntBASIC3.79□□□□□ -1.8
LIG3P49916 RPL23AP62-201ENST00000463396 453 ntBASIC3.79□□□□□ -1.8
LIG3P49916 AL121594.1-201ENST00000475906 575 ntBASIC3.79□□□□□ -1.8
LIG3P49916 RPL23AP70-201ENST00000483361 460 ntBASIC3.79□□□□□ -1.8
LIG3P49916 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.79□□□□□ -1.8
LIG3P49916 Y_RNA.777-201ENST00000516982 102 ntBASIC3.79□□□□□ -1.8
LIG3P49916 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.79□□□□□ -1.8
LIG3P49916 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC3.79□□□□□ -1.8
LIG3P49916 AP002392.1-201ENST00000537692 208 ntBASIC3.79□□□□□ -1.8
LIG3P49916 AL137100.2-201ENST00000555786 315 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms