Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.11□□□□□ -2.07
SOX3P41225 AC092268.1-201ENST00000342691 405 ntBASIC2.11□□□□□ -2.07
SOX3P41225 Y_RNA.70-201ENST00000362886 110 ntBASIC2.11□□□□□ -2.07
SOX3P41225 SNORA67.1-201ENST00000364749 141 ntBASIC2.11□□□□□ -2.07
SOX3P41225 RNU6-596P-201ENST00000365395 98 ntBASIC2.11□□□□□ -2.07
SOX3P41225 RNU6-784P-201ENST00000384330 106 ntBASIC2.11□□□□□ -2.07
SOX3P41225 AL135786.1-201ENST00000415892 214 ntBASIC2.11□□□□□ -2.07
SOX3P41225 EIF1AXP1-201ENST00000419267 435 ntBASIC2.11□□□□□ -2.07
SOX3P41225 AC003685.2-201ENST00000422795 395 ntBASIC2.11□□□□□ -2.07
SOX3P41225 RPS3AP52-201ENST00000435639 297 ntBASIC2.11□□□□□ -2.07
SOX3P41225 FTH1P25-201ENST00000447665 469 ntBASIC2.11□□□□□ -2.07
SOX3P41225 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.11□□□□□ -2.07
SOX3P41225 AC104564.1-201ENST00000493028 407 ntBASIC2.11□□□□□ -2.07
SOX3P41225 HMGB1P35-201ENST00000503360 598 ntBASIC2.11□□□□□ -2.07
SOX3P41225 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.11□□□□□ -2.07
SOX3P41225 AC116337.1-201ENST00000509680 687 ntBASIC2.11□□□□□ -2.07
SOX3P41225 RNU1-54P-201ENST00000517181 120 ntBASIC2.11□□□□□ -2.07
SOX3P41225 RNU1-104P-201ENST00000517280 175 ntBASIC2.11□□□□□ -2.07
SOX3P41225 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.11□□□□□ -2.07
SOX3P41225 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.11□□□□□ -2.07
SOX3P41225 AC023824.2-201ENST00000566185 400 ntBASIC2.11□□□□□ -2.07
SOX3P41225 MYL12BP1-201ENST00000569826 507 ntBASIC2.11□□□□□ -2.07
SOX3P41225 MIR3136-201ENST00000583498 78 ntBASIC2.11□□□□□ -2.07
SOX3P41225 POLR3GP2-201ENST00000588366 668 ntBASIC2.11□□□□□ -2.07
SOX3P41225 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.11□□□□□ -2.07
SOX3P41225 AC243960.4-201ENST00000600532 288 ntBASIC2.11□□□□□ -2.07
SOX3P41225 AL449363.1-201ENST00000617815 186 ntBASIC2.11□□□□□ -2.07
SOX3P41225 MIR5739-201ENST00000619803 80 ntBASIC2.11□□□□□ -2.07
SOX3P41225 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.11□□□□□ -2.07
SOX3P41225 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.1□□□□□ -2.07
SOX3P41225 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
SOX3P41225 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.1□□□□□ -2.07
SOX3P41225 RNU6-593P-201ENST00000364716 112 ntBASIC2.1□□□□□ -2.07
SOX3P41225 RNU6-867P-201ENST00000364956 107 ntBASIC2.1□□□□□ -2.07
SOX3P41225 RNU6-142P-201ENST00000384019 107 ntBASIC2.1□□□□□ -2.07
SOX3P41225 RNU6-306P-201ENST00000384617 107 ntBASIC2.1□□□□□ -2.07
SOX3P41225 MIR95-201ENST00000385072 81 ntBASIC2.1□□□□□ -2.07
SOX3P41225 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
SOX3P41225 RNA5SP425-201ENST00000410336 112 ntBASIC2.1□□□□□ -2.07
SOX3P41225 RPL37P10-201ENST00000412884 288 ntBASIC2.1□□□□□ -2.07
SOX3P41225 AL353752.1-201ENST00000454946 260 ntBASIC2.1□□□□□ -2.07
SOX3P41225 SNORD5.1-201ENST00000458800 75 ntBASIC2.1□□□□□ -2.07
SOX3P41225 HMGB3P3-201ENST00000510526 400 ntBASIC2.1□□□□□ -2.07
SOX3P41225 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.1□□□□□ -2.07
SOX3P41225 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.1□□□□□ -2.07
SOX3P41225 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.1□□□□□ -2.07
SOX3P41225 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.1□□□□□ -2.07
SOX3P41225 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.1□□□□□ -2.07
SOX3P41225 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.1□□□□□ -2.07
SOX3P41225 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
SOX3P41225 AC016256.1-201ENST00000547971 354 ntBASIC2.1□□□□□ -2.07
SOX3P41225 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.1□□□□□ -2.07
SOX3P41225 IMMP1LP2-201ENST00000552954 492 ntBASIC2.1□□□□□ -2.07
SOX3P41225 AC007375.1-201ENST00000554513 578 ntBASIC2.1□□□□□ -2.07
SOX3P41225 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.1□□□□□ -2.07
SOX3P41225 AC093249.1-201ENST00000567049 203 ntBASIC2.1□□□□□ -2.07
SOX3P41225 MIR3945-201ENST00000581853 98 ntBASIC2.1□□□□□ -2.07
SOX3P41225 FGF7P1-201ENST00000582820 288 ntBASIC2.1□□□□□ -2.07
SOX3P41225 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.1□□□□□ -2.07
SOX3P41225 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.1□□□□□ -2.07
SOX3P41225 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.1□□□□□ -2.07
SOX3P41225 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.1□□□□□ -2.07
SOX3P41225 AL008636.1-201ENST00000625038 1018 ntBASIC2.1□□□□□ -2.07
SOX3P41225 SNORD98-201ENST00000636377 67 ntBASIC2.1□□□□□ -2.07
SOX3P41225 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.1□□□□□ -2.07
SOX3P41225 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
SOX3P41225 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
SOX3P41225 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
SOX3P41225 MTND5P6-201ENST00000422338 1798 ntBASIC2.09□□□□□ -2.07
SOX3P41225 U8.2-201ENST00000363156 134 ntBASIC2.09□□□□□ -2.07
SOX3P41225 Y_RNA.123-201ENST00000363338 102 ntBASIC2.09□□□□□ -2.07
SOX3P41225 SNORA70B-201ENST00000384210 135 ntBASIC2.09□□□□□ -2.07
SOX3P41225 Y_RNA.474-201ENST00000384341 102 ntBASIC2.09□□□□□ -2.07
SOX3P41225 Y_RNA.482-201ENST00000384377 111 ntBASIC2.09□□□□□ -2.07
SOX3P41225 Y_RNA.504-201ENST00000384481 104 ntBASIC2.09□□□□□ -2.07
SOX3P41225 RNU6-1009P-201ENST00000390996 107 ntBASIC2.09□□□□□ -2.07
SOX3P41225 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.09□□□□□ -2.07
SOX3P41225 AL590135.1-201ENST00000422215 156 ntBASIC2.09□□□□□ -2.07
SOX3P41225 OOSP1P1-201ENST00000423265 274 ntBASIC2.09□□□□□ -2.07
SOX3P41225 AC019205.3-201ENST00000424573 156 ntBASIC2.09□□□□□ -2.07
SOX3P41225 AL356320.1-201ENST00000429616 163 ntBASIC2.09□□□□□ -2.07
SOX3P41225 AC018634.1-201ENST00000437554 401 ntBASIC2.09□□□□□ -2.07
SOX3P41225 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.09□□□□□ -2.07
SOX3P41225 AC016700.2-201ENST00000446011 156 ntBASIC2.09□□□□□ -2.07
SOX3P41225 AC015911.1-201ENST00000495111 156 ntBASIC2.09□□□□□ -2.07
SOX3P41225 AC026782.1-201ENST00000512952 449 ntBASIC2.09□□□□□ -2.07
SOX3P41225 ACA59.1-201ENST00000515966 143 ntBASIC2.09□□□□□ -2.07
SOX3P41225 AC105029.1-201ENST00000520250 669 ntBASIC2.09□□□□□ -2.07
SOX3P41225 AL138963.2-201ENST00000605137 226 ntBASIC2.09□□□□□ -2.07
SOX3P41225 MIR6766-201ENST00000622641 72 ntBASIC2.09□□□□□ -2.07
SOX3P41225 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
SOX3P41225 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.08□□□□□ -2.08
SOX3P41225 SNORD50.1-201ENST00000362987 71 ntBASIC2.08□□□□□ -2.08
SOX3P41225 Y_RNA.263-201ENST00000364659 114 ntBASIC2.08□□□□□ -2.08
SOX3P41225 RNA5SP125-201ENST00000364843 120 ntBASIC2.08□□□□□ -2.08
SOX3P41225 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
SOX3P41225 AL591034.2-201ENST00000402839 359 ntBASIC2.08□□□□□ -2.08
SOX3P41225 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.08□□□□□ -2.08
SOX3P41225 RNU6-174P-201ENST00000410406 106 ntBASIC2.08□□□□□ -2.08
SOX3P41225 RN7SKP223-201ENST00000410582 62 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 128.4 ms