Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC010928.2-201ENST00000588017 287 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 SNORD58B-201ENST00000607313 66 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 RNU6-91P-201ENST00000607774 107 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.18□□□□□ -1.9
SMARCA1P28370 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.18□□□□□ -1.9
SMARCA1P28370 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.18□□□□□ -1.9
SMARCA1P28370 MIR7515-201ENST00000637837 67 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 AC233981.2-201ENST00000611524 1614 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
SMARCA1P28370 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SMARCA1P28370 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
SMARCA1P28370 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
SMARCA1P28370 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
SMARCA1P28370 RNU6-1286P-201ENST00000383871 107 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 RNU6-968P-201ENST00000384076 107 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 SNORA29-201ENST00000384183 140 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 Y_RNA.504-201ENST00000384481 104 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 MIR181A2-201ENST00000384863 110 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 MRPL42P3-201ENST00000401492 326 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 RNU2-23P-201ENST00000410545 195 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 RN7SKP61-201ENST00000410642 295 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 EIF1AXP1-201ENST00000419267 435 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 AL358453.1-201ENST00000422522 250 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 AC096644.2-201ENST00000429278 159 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.17□□□□□ -1.9
SMARCA1P28370 AC112220.1-201ENST00000434628 355 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 AC025750.2-201ENST00000442609 450 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 AC090525.1-201ENST00000479116 478 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 AF186996.7-201ENST00000492781 209 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 AC104564.1-201ENST00000493028 407 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.17□□□□□ -1.9
SMARCA1P28370 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SMARCA1P28370 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.17□□□□□ -1.9
SMARCA1P28370 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.17□□□□□ -1.9
SMARCA1P28370 AC004584.2-201ENST00000570407 410 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 MIR4680-201ENST00000580906 66 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 RPS15AP11-201ENST00000594193 385 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 AC087588.2-201ENST00000617667 426 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 AL159153.1-201ENST00000619688 317 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 AC138305.3-201ENST00000624988 240 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.17□□□□□ -1.9
SMARCA1P28370 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SMARCA1P28370 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.17□□□□□ -1.9
SMARCA1P28370 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.17□□□□□ -1.9
SMARCA1P28370 ZNF72P-201ENST00000425869 1908 ntBASIC3.17□□□□□ -1.9
SMARCA1P28370 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
SMARCA1P28370 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
SMARCA1P28370 AC026241.1-201ENST00000517873 2142 ntBASIC3.16□□□□□ -1.9
SMARCA1P28370 Y_RNA.158-201ENST00000363651 101 ntBASIC3.16□□□□□ -1.9
SMARCA1P28370 SNORA36A-201ENST00000384221 132 ntBASIC3.16□□□□□ -1.9
SMARCA1P28370 SNORA12.2-201ENST00000391040 156 ntBASIC3.16□□□□□ -1.9
SMARCA1P28370 RPL19P1-201ENST00000411635 428 ntBASIC3.16□□□□□ -1.9
SMARCA1P28370 AC113618.1-201ENST00000416747 285 ntBASIC3.16□□□□□ -1.9
SMARCA1P28370 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.16□□□□□ -1.9
SMARCA1P28370 AC092423.1-201ENST00000430165 186 ntBASIC3.16□□□□□ -1.9
SMARCA1P28370 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.16□□□□□ -1.9
SMARCA1P28370 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.16□□□□□ -1.9
SMARCA1P28370 AL353752.1-201ENST00000454946 260 ntBASIC3.16□□□□□ -1.9
SMARCA1P28370 RN7SKP210-201ENST00000459176 261 ntBASIC3.16□□□□□ -1.9
SMARCA1P28370 SNORA31.6-201ENST00000516241 130 ntBASIC3.16□□□□□ -1.9
SMARCA1P28370 RNU6-1045P-201ENST00000516321 107 ntBASIC3.16□□□□□ -1.9
SMARCA1P28370 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.16□□□□□ -1.9
SMARCA1P28370 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.16□□□□□ -1.9
SMARCA1P28370 AC104581.2-201ENST00000572227 430 ntBASIC3.16□□□□□ -1.9
SMARCA1P28370 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.16□□□□□ -1.9
SMARCA1P28370 AC091812.1-201ENST00000432235 1948 ntBASIC3.16□□□□□ -1.9
SMARCA1P28370 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.16□□□□□ -1.9
SMARCA1P28370 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.16□□□□□ -1.9
SMARCA1P28370 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.16□□□□□ -1.9
SMARCA1P28370 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.16□□□□□ -1.9
SMARCA1P28370 AC010329.5-201ENST00000623497 2174 ntBASIC3.15□□□□□ -1.9
SMARCA1P28370 Y_RNA.40-201ENST00000362645 93 ntBASIC3.15□□□□□ -1.91
SMARCA1P28370 RNU5B-2P-201ENST00000363036 113 ntBASIC3.15□□□□□ -1.91
SMARCA1P28370 RNU4-42P-201ENST00000364738 142 ntBASIC3.15□□□□□ -1.91
SMARCA1P28370 RNU1-109P-201ENST00000383960 147 ntBASIC3.15□□□□□ -1.91
SMARCA1P28370 Y_RNA.500-201ENST00000384466 111 ntBASIC3.15□□□□□ -1.91
SMARCA1P28370 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
SMARCA1P28370 RNU6-700P-201ENST00000391043 107 ntBASIC3.15□□□□□ -1.91
SMARCA1P28370 Y_RNA.645-201ENST00000391229 102 ntBASIC3.15□□□□□ -1.91
SMARCA1P28370 RNU2-25P-201ENST00000411041 191 ntBASIC3.15□□□□□ -1.91
SMARCA1P28370 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.15□□□□□ -1.91
SMARCA1P28370 MTCYBP10-201ENST00000424905 650 ntBASIC3.15□□□□□ -1.91
SMARCA1P28370 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.15□□□□□ -1.91
SMARCA1P28370 AL353705.4-201ENST00000449661 238 ntBASIC3.15□□□□□ -1.91
SMARCA1P28370 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.15□□□□□ -1.91
SMARCA1P28370 AC007375.1-201ENST00000554513 578 ntBASIC3.15□□□□□ -1.91
SMARCA1P28370 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.15□□□□□ -1.91
SMARCA1P28370 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.15□□□□□ -1.91
SMARCA1P28370 MIR5571-201ENST00000577998 113 ntBASIC3.15□□□□□ -1.91
SMARCA1P28370 AC104695.3-201ENST00000604052 296 ntBASIC3.15□□□□□ -1.91
SMARCA1P28370 AL606534.2-204ENST00000635008 178 ntBASIC3.15□□□□□ -1.91
SMARCA1P28370 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.15□□□□□ -1.91
SMARCA1P28370 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.15□□□□□ -1.91
SMARCA1P28370 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SMARCA1P28370 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SMARCA1P28370 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.14□□□□□ -1.91
SMARCA1P28370 SNORA5B-201ENST00000363786 132 ntBASIC3.14□□□□□ -1.91
SMARCA1P28370 RNU4-9P-201ENST00000364951 139 ntBASIC3.14□□□□□ -1.91
SMARCA1P28370 HMGN2P35-201ENST00000412164 270 ntBASIC3.14□□□□□ -1.91
SMARCA1P28370 AC138623.1-201ENST00000418060 216 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 137.8 ms