Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 SNORD2.1-201ENST00000458762 69 ntBASIC4.35□□□□□ -1.71
RFX1P22670 U3.44-201ENST00000458938 192 ntBASIC4.35□□□□□ -1.71
RFX1P22670 AC026726.1-201ENST00000512859 601 ntBASIC4.35□□□□□ -1.71
RFX1P22670 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.35□□□□□ -1.71
RFX1P22670 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC4.35□□□□□ -1.71
RFX1P22670 AC092628.2-201ENST00000622492 339 ntBASIC4.35□□□□□ -1.71
RFX1P22670 AC068205.3-201ENST00000636385 468 ntBASIC4.35□□□□□ -1.71
RFX1P22670 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.35□□□□□ -1.71
RFX1P22670 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.35□□□□□ -1.71
RFX1P22670 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
RFX1P22670 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
RFX1P22670 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
RFX1P22670 RNU6-545P-201ENST00000362681 104 ntBASIC4.34□□□□□ -1.71
RFX1P22670 Y_RNA.217-201ENST00000364214 105 ntBASIC4.34□□□□□ -1.71
RFX1P22670 RNU6-662P-201ENST00000384253 104 ntBASIC4.34□□□□□ -1.71
RFX1P22670 COX6CP10-201ENST00000416832 224 ntBASIC4.34□□□□□ -1.71
RFX1P22670 AC009963.1-201ENST00000417265 157 ntBASIC4.34□□□□□ -1.71
RFX1P22670 AL691449.1-201ENST00000426570 421 ntBASIC4.34□□□□□ -1.71
RFX1P22670 AC027124.2-201ENST00000428249 105 ntBASIC4.34□□□□□ -1.71
RFX1P22670 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.34□□□□□ -1.71
RFX1P22670 Y_RNA.641-201ENST00000459414 105 ntBASIC4.34□□□□□ -1.71
RFX1P22670 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.34□□□□□ -1.71
RFX1P22670 RNU6-155P-201ENST00000516347 100 ntBASIC4.34□□□□□ -1.71
RFX1P22670 SNORA70.24-201ENST00000517233 118 ntBASIC4.34□□□□□ -1.71
RFX1P22670 AC011471.1-201ENST00000585766 187 ntBASIC4.34□□□□□ -1.71
RFX1P22670 AC025946.2-201ENST00000603398 234 ntBASIC4.34□□□□□ -1.71
RFX1P22670 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC4.34□□□□□ -1.71
RFX1P22670 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.71
RFX1P22670 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
RFX1P22670 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC4.34□□□□□ -1.72
RFX1P22670 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
RFX1P22670 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
RFX1P22670 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.33□□□□□ -1.72
RFX1P22670 RNU6-682P-201ENST00000363843 106 ntBASIC4.33□□□□□ -1.72
RFX1P22670 RNU6-47P-201ENST00000383866 107 ntBASIC4.33□□□□□ -1.72
RFX1P22670 Y_RNA.415-201ENST00000384012 112 ntBASIC4.33□□□□□ -1.72
RFX1P22670 RNU6-1083P-201ENST00000384022 107 ntBASIC4.33□□□□□ -1.72
RFX1P22670 RNU6-1248P-201ENST00000391096 64 ntBASIC4.33□□□□□ -1.72
RFX1P22670 SNORA57.3-201ENST00000411095 141 ntBASIC4.33□□□□□ -1.72
RFX1P22670 AC004866.1-201ENST00000411748 78 ntBASIC4.33□□□□□ -1.72
RFX1P22670 AC083863.1-201ENST00000438811 231 ntBASIC4.33□□□□□ -1.72
RFX1P22670 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC4.33□□□□□ -1.72
RFX1P22670 RNU6-191P-201ENST00000516295 94 ntBASIC4.33□□□□□ -1.72
RFX1P22670 RNU2-44P-201ENST00000516795 194 ntBASIC4.33□□□□□ -1.72
RFX1P22670 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.33□□□□□ -1.72
RFX1P22670 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC4.33□□□□□ -1.72
RFX1P22670 SNORA51-201ENST00000606420 132 ntBASIC4.33□□□□□ -1.72
RFX1P22670 AC073349.3-201ENST00000617616 186 ntBASIC4.33□□□□□ -1.72
RFX1P22670 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.33□□□□□ -1.72
RFX1P22670 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
RFX1P22670 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
RFX1P22670 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
RFX1P22670 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
RFX1P22670 AC018555.1-201ENST00000567548 1980 ntBASIC4.33□□□□□ -1.72
RFX1P22670 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
RFX1P22670 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
RFX1P22670 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
RFX1P22670 AC091564.4-201ENST00000533934 2194 ntBASIC4.32□□□□□ -1.72
RFX1P22670 RNU6-1020P-201ENST00000363684 107 ntBASIC4.32□□□□□ -1.72
RFX1P22670 U8.12-201ENST00000384701 133 ntBASIC4.32□□□□□ -1.72
RFX1P22670 AL500522.2-201ENST00000448562 343 ntBASIC4.32□□□□□ -1.72
RFX1P22670 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC4.32□□□□□ -1.72
RFX1P22670 AC110768.1-201ENST00000509222 400 ntBASIC4.32□□□□□ -1.72
RFX1P22670 AC087441.2-201ENST00000529141 262 ntBASIC4.32□□□□□ -1.72
RFX1P22670 MIR5006-201ENST00000583027 110 ntBASIC4.32□□□□□ -1.72
RFX1P22670 AC072026.1-201ENST00000605023 201 ntBASIC4.32□□□□□ -1.72
RFX1P22670 AC005828.6-201ENST00000606610 232 ntBASIC4.32□□□□□ -1.72
RFX1P22670 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
RFX1P22670 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.32□□□□□ -1.72
RFX1P22670 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
RFX1P22670 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
RFX1P22670 AC007256.1-201ENST00000392253 2765 ntBASIC4.31□□□□□ -1.72
RFX1P22670 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
RFX1P22670 RNU4-80P-201ENST00000363200 141 ntBASIC4.31□□□□□ -1.72
RFX1P22670 MIR491-201ENST00000384877 84 ntBASIC4.31□□□□□ -1.72
RFX1P22670 AC009414.1-201ENST00000427200 443 ntBASIC4.31□□□□□ -1.72
RFX1P22670 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.31□□□□□ -1.72
RFX1P22670 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.31□□□□□ -1.72
RFX1P22670 RNA5SP112-201ENST00000515937 99 ntBASIC4.31□□□□□ -1.72
RFX1P22670 RNU2-12P-201ENST00000517216 168 ntBASIC4.31□□□□□ -1.72
RFX1P22670 SCARNA11.3-201ENST00000517276 130 ntBASIC4.31□□□□□ -1.72
RFX1P22670 DEFB131C-201ENST00000528817 165 ntBASIC4.31□□□□□ -1.72
RFX1P22670 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC4.31□□□□□ -1.72
RFX1P22670 MIR3145-201ENST00000580727 82 ntBASIC4.31□□□□□ -1.72
RFX1P22670 AC006380.1-201ENST00000603598 186 ntBASIC4.31□□□□□ -1.72
RFX1P22670 AC012442.3-202ENST00000636742 206 ntBASIC4.31□□□□□ -1.72
RFX1P22670 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.31□□□□□ -1.72
RFX1P22670 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC4.31□□□□□ -1.72
RFX1P22670 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
RFX1P22670 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.31□□□□□ -1.72
RFX1P22670 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.31□□□□□ -1.72
RFX1P22670 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
RFX1P22670 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
RFX1P22670 SNORA67.2-201ENST00000384300 149 ntBASIC4.3□□□□□ -1.72
RFX1P22670 MIR29B2-201ENST00000385055 81 ntBASIC4.3□□□□□ -1.72
RFX1P22670 Z98742.2-201ENST00000431564 187 ntBASIC4.3□□□□□ -1.72
RFX1P22670 AC093663.1-201ENST00000497190 394 ntBASIC4.3□□□□□ -1.72
RFX1P22670 RNU6-861P-201ENST00000516745 106 ntBASIC4.3□□□□□ -1.72
RFX1P22670 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.3□□□□□ -1.72
RFX1P22670 MIR4765-201ENST00000585007 77 ntBASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms