Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 MTND3P12-201ENST00000559068 328 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 MIR3198-2-201ENST00000577868 80 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 AC008088.1-201ENST00000580993 280 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 CYP2C61P-201ENST00000604072 290 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 AC103810.8-201ENST00000607347 118 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 AL158063.1-201ENST00000615349 536 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 AL157834.3-201ENST00000615543 103 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 AL590240.4-201ENST00000616908 390 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 U1.36-201ENST00000620684 176 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
CPSF4O95639 MTND4P14-201ENST00000435799 1354 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 RNU6-23P-201ENST00000363283 107 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 RNA5SP493-201ENST00000364115 91 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 SNORD114-6-201ENST00000364393 72 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 RNU6-26P-201ENST00000383985 107 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 RNU6-517P-201ENST00000384362 110 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 SNORD116-8-201ENST00000384365 95 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 MTCYBP2-201ENST00000407745 171 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 AL357139.1-201ENST00000407792 426 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 RN7SKP61-201ENST00000410642 295 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC1.08□□□□□ -2.24
CPSF4O95639 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.08□□□□□ -2.24
CPSF4O95639 AC078809.1-201ENST00000427601 140 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.08□□□□□ -2.24
CPSF4O95639 MTND1P26-201ENST00000440488 538 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.08□□□□□ -2.24
CPSF4O95639 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.08□□□□□ -2.24
CPSF4O95639 RNU6-333P-201ENST00000459117 107 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 RPL36AP21-201ENST00000490372 323 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.08□□□□□ -2.24
CPSF4O95639 AC091874.1-201ENST00000511402 339 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 RNVU1-2-201ENST00000516326 135 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.08□□□□□ -2.24
CPSF4O95639 AC087441.2-201ENST00000529141 262 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.08□□□□□ -2.24
CPSF4O95639 MIR3169-201ENST00000578032 83 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 AL391646.1-201ENST00000603860 190 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 RNU6-85P-201ENST00000605989 107 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 AC008147.4-201ENST00000617570 1204 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 AC078883.4-201ENST00000623218 367 ntBASIC1.08□□□□□ -2.24
CPSF4O95639 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC1.08□□□□□ -2.24
CPSF4O95639 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.08□□□□□ -2.24
CPSF4O95639 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.08□□□□□ -2.24
CPSF4O95639 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
CPSF4O95639 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
CPSF4O95639 RNU6-160P-201ENST00000384591 107 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 MIR150-201ENST00000385048 84 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 SNORA48.1-201ENST00000390879 135 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AC009310.1-201ENST00000414414 451 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.07□□□□□ -2.24
CPSF4O95639 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.07□□□□□ -2.24
CPSF4O95639 AL591704.2-201ENST00000421658 181 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.07□□□□□ -2.24
CPSF4O95639 RPL23AP95-201ENST00000426806 265 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AC108667.1-201ENST00000428618 249 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AL035666.1-201ENST00000446195 348 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AC073415.1-201ENST00000449240 153 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 RNU6-956P-201ENST00000458868 103 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 RNU7-63P-201ENST00000459054 62 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 RNU7-180P-201ENST00000459240 63 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AC108210.2-201ENST00000503681 201 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AC079140.5-201ENST00000507882 310 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AC069113.1-201ENST00000517763 267 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AC015712.3-201ENST00000559380 164 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.07□□□□□ -2.24
CPSF4O95639 AC109446.1-201ENST00000566172 220 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.07□□□□□ -2.24
CPSF4O95639 AC078795.3-201ENST00000602913 472 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AC012507.3-201ENST00000603556 477 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 Z99497.2-201ENST00000603634 310 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AC016925.2-201ENST00000605108 242 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 U2.17-201ENST00000611454 95 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AL353997.5-201ENST00000618886 171 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AL353770.2-201ENST00000620024 78 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 Z69908.1-201ENST00000622603 247 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AC130454.1-201ENST00000622948 401 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AC005609.4-201ENST00000625071 447 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 AL450472.1-202ENST00000637286 180 ntBASIC1.07□□□□□ -2.24
CPSF4O95639 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
CPSF4O95639 AP000568.1-201ENST00000282964 442 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 RNU4-56P-201ENST00000364700 142 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 Y_RNA.332-201ENST00000365271 113 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 RNU6-996P-201ENST00000365438 107 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 Y_RNA.381-201ENST00000365666 102 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 RNU5A-6P-201ENST00000384136 116 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 SNORA26.3-201ENST00000391119 136 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 RNU6-1158P-201ENST00000391167 107 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 SNORA11.2-201ENST00000408318 127 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 RNA5SP201-201ENST00000410316 124 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC1.06□□□□□ -2.24
CPSF4O95639 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC1.06□□□□□ -2.24
CPSF4O95639 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.06□□□□□ -2.24
CPSF4O95639 MTCO2P19-201ENST00000427513 598 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 AC073464.1-201ENST00000429823 534 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 AL133396.1-201ENST00000432048 687 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 FTH1P25-201ENST00000447665 469 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.06□□□□□ -2.24
CPSF4O95639 AC132942.1-201ENST00000486753 483 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 130.8 ms