Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNU6-1281P-201ENST00000516223 105 ntBASIC1.87□□□□□ -2.11
SDC3O75056 RNU6-1038P-201ENST00000516516 104 ntBASIC1.87□□□□□ -2.11
SDC3O75056 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.87□□□□□ -2.11
SDC3O75056 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.87□□□□□ -2.11
SDC3O75056 AL157687.1-201ENST00000554853 619 ntBASIC1.87□□□□□ -2.11
SDC3O75056 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.87□□□□□ -2.11
SDC3O75056 MIR3935-201ENST00000583472 104 ntBASIC1.87□□□□□ -2.11
SDC3O75056 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.87□□□□□ -2.11
SDC3O75056 AC023043.2-201ENST00000589678 1026 ntBASIC1.87□□□□□ -2.11
SDC3O75056 AC243960.4-201ENST00000600532 288 ntBASIC1.87□□□□□ -2.11
SDC3O75056 AL034555.1-201ENST00000604816 211 ntBASIC1.87□□□□□ -2.11
SDC3O75056 AL627230.6-201ENST00000611129 280 ntBASIC1.87□□□□□ -2.11
SDC3O75056 MIR8081-201ENST00000611533 95 ntBASIC1.87□□□□□ -2.11
SDC3O75056 RNU6-522P-201ENST00000364497 107 ntBASIC1.86□□□□□ -2.11
SDC3O75056 RNU6-483P-201ENST00000384088 108 ntBASIC1.86□□□□□ -2.11
SDC3O75056 SNORD116-4-201ENST00000384733 96 ntBASIC1.86□□□□□ -2.11
SDC3O75056 MIR181A1-201ENST00000385026 110 ntBASIC1.86□□□□□ -2.11
SDC3O75056 RNU6-1106P-201ENST00000390845 107 ntBASIC1.86□□□□□ -2.11
SDC3O75056 Y_RNA.595-201ENST00000410403 105 ntBASIC1.86□□□□□ -2.11
SDC3O75056 AP000275.1-201ENST00000411943 390 ntBASIC1.86□□□□□ -2.11
SDC3O75056 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.86□□□□□ -2.11
SDC3O75056 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.86□□□□□ -2.11
SDC3O75056 IFNA20P-201ENST00000436840 528 ntBASIC1.86□□□□□ -2.11
SDC3O75056 RPL23AP6-201ENST00000446637 472 ntBASIC1.86□□□□□ -2.11
SDC3O75056 AL021397.1-201ENST00000451806 248 ntBASIC1.86□□□□□ -2.11
SDC3O75056 RPL23AP3-201ENST00000453844 468 ntBASIC1.86□□□□□ -2.11
SDC3O75056 PRELID3BP1-201ENST00000457142 540 ntBASIC1.86□□□□□ -2.11
SDC3O75056 RNU6-720P-201ENST00000516363 108 ntBASIC1.86□□□□□ -2.11
SDC3O75056 AP005597.4-201ENST00000526762 229 ntBASIC1.86□□□□□ -2.11
SDC3O75056 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.86□□□□□ -2.11
SDC3O75056 MIR5692C1-201ENST00000585309 91 ntBASIC1.86□□□□□ -2.11
SDC3O75056 AC005034.5-201ENST00000604219 466 ntBASIC1.86□□□□□ -2.11
SDC3O75056 RNU6-89P-201ENST00000606519 100 ntBASIC1.86□□□□□ -2.11
SDC3O75056 DISC2.1-201ENST00000612827 205 ntBASIC1.86□□□□□ -2.11
SDC3O75056 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
SDC3O75056 FER-210ENST00000628534 558 ntTSL 5 BASIC1.86□□□□□ -2.11
SDC3O75056 SNORD98-201ENST00000636377 67 ntBASIC1.86□□□□□ -2.11
SDC3O75056 MIR1321-201ENST00000637766 79 ntBASIC1.86□□□□□ -2.11
SDC3O75056 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
SDC3O75056 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.86□□□□□ -2.11
SDC3O75056 ZNF355P-201ENST00000427301 3216 ntBASIC1.85□□□□□ -2.11
SDC3O75056 AC092268.1-201ENST00000342691 405 ntBASIC1.85□□□□□ -2.11
SDC3O75056 RNU4-15P-201ENST00000362613 141 ntBASIC1.85□□□□□ -2.11
SDC3O75056 Y_RNA.164-201ENST00000363709 102 ntBASIC1.85□□□□□ -2.11
SDC3O75056 Y_RNA.372-201ENST00000365599 102 ntBASIC1.85□□□□□ -2.11
SDC3O75056 MIR29C-201ENST00000385231 88 ntBASIC1.85□□□□□ -2.11
SDC3O75056 SNORA17.3-201ENST00000391159 129 ntBASIC1.85□□□□□ -2.11
SDC3O75056 BTF3L4P2-201ENST00000392798 346 ntBASIC1.85□□□□□ -2.11
SDC3O75056 EIF4E2P1-201ENST00000393781 255 ntBASIC1.85□□□□□ -2.11
SDC3O75056 Y_RNA.597-201ENST00000410463 100 ntBASIC1.85□□□□□ -2.11
SDC3O75056 RNU6-1068P-201ENST00000410958 103 ntBASIC1.85□□□□□ -2.11
SDC3O75056 AL030996.1-201ENST00000411430 235 ntBASIC1.85□□□□□ -2.11
SDC3O75056 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SDC3O75056 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.85□□□□□ -2.11
SDC3O75056 HMGN2P19-201ENST00000425149 265 ntBASIC1.85□□□□□ -2.11
SDC3O75056 AC108667.1-201ENST00000428618 249 ntBASIC1.85□□□□□ -2.11
SDC3O75056 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.85□□□□□ -2.11
SDC3O75056 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.85□□□□□ -2.11
SDC3O75056 SNORD13-201ENST00000459299 104 ntBASIC1.85□□□□□ -2.11
SDC3O75056 RNU6-1037P-201ENST00000459571 107 ntBASIC1.85□□□□□ -2.11
SDC3O75056 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.85□□□□□ -2.11
SDC3O75056 SNORA19.2-201ENST00000516013 114 ntBASIC1.85□□□□□ -2.11
SDC3O75056 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.85□□□□□ -2.11
SDC3O75056 HSPE1P4-201ENST00000550617 308 ntBASIC1.85□□□□□ -2.11
SDC3O75056 MIR4299-201ENST00000577899 72 ntBASIC1.85□□□□□ -2.11
SDC3O75056 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.85□□□□□ -2.11
SDC3O75056 AC016727.1-205ENST00000605437 569 ntBASIC1.85□□□□□ -2.11
SDC3O75056 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.85□□□□□ -2.11
SDC3O75056 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SDC3O75056 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SDC3O75056 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.85□□□□□ -2.11
SDC3O75056 OR4G1P-203ENST00000641984 1631 ntBASIC1.84□□□□□ -2.11
SDC3O75056 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.84□□□□□ -2.11
SDC3O75056 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SDC3O75056 SNORD32B-201ENST00000364460 84 ntBASIC1.84□□□□□ -2.11
SDC3O75056 SNORD73A-201ENST00000386062 65 ntBASIC1.84□□□□□ -2.11
SDC3O75056 MTCYBP2-201ENST00000407745 171 ntBASIC1.84□□□□□ -2.11
SDC3O75056 MIR1262-201ENST00000408276 93 ntBASIC1.84□□□□□ -2.11
SDC3O75056 AL158823.1-201ENST00000418441 478 ntBASIC1.84□□□□□ -2.11
SDC3O75056 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.84□□□□□ -2.11
SDC3O75056 ERLEC1P1-201ENST00000433806 578 ntBASIC1.84□□□□□ -2.11
SDC3O75056 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.84□□□□□ -2.11
SDC3O75056 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.84□□□□□ -2.11
SDC3O75056 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.84□□□□□ -2.11
SDC3O75056 SNRPGP7-201ENST00000469016 106 ntBASIC1.84□□□□□ -2.11
SDC3O75056 AC016632.1-201ENST00000503994 196 ntBASIC1.84□□□□□ -2.11
SDC3O75056 MRPS17P9-201ENST00000511924 393 ntBASIC1.84□□□□□ -2.11
SDC3O75056 PTP4A1P4-201ENST00000512479 322 ntBASIC1.84□□□□□ -2.11
SDC3O75056 SNORA25.15-201ENST00000516487 89 ntBASIC1.84□□□□□ -2.11
SDC3O75056 Y_RNA.704-201ENST00000516851 102 ntBASIC1.84□□□□□ -2.11
SDC3O75056 RNU6-323P-201ENST00000521915 107 ntBASIC1.84□□□□□ -2.11
SDC3O75056 AP005660.1-201ENST00000522972 293 ntBASIC1.84□□□□□ -2.11
SDC3O75056 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.84□□□□□ -2.11
SDC3O75056 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.84□□□□□ -2.11
SDC3O75056 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.84□□□□□ -2.11
SDC3O75056 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.84□□□□□ -2.11
SDC3O75056 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.84□□□□□ -2.11
SDC3O75056 AC004492.1-201ENST00000607036 742 ntBASIC1.84□□□□□ -2.11
SDC3O75056 AC064807.4-201ENST00000607201 407 ntBASIC1.84□□□□□ -2.11
SDC3O75056 AF250324.2-201ENST00000608299 610 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 161.4 ms