Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AC012306.1-201ENST00000423267 114 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 AC019205.3-201ENST00000424573 156 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 AC016700.2-201ENST00000446011 156 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 CHEK2P4-201ENST00000450340 246 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 AL353752.1-201ENST00000454946 260 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 AC112492.4-201ENST00000456549 352 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 BX510359.1-201ENST00000456973 237 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 AC090525.1-201ENST00000479116 478 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 AC015911.1-201ENST00000495111 156 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 HMGB1P35-201ENST00000503360 598 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 RNA5SP385-201ENST00000515947 110 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 SCARNA17.1-201ENST00000516211 143 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 SCARNA17.2-201ENST00000516334 143 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 RNU6-1137P-201ENST00000517073 99 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 AC073410.2-201ENST00000603240 332 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 AL078605.1-201ENST00000603529 500 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 SCARNA17.4-201ENST00000614296 143 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.92
PCDHA3Q9Y5H8 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
PCDHA3Q9Y5H8 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 RNU6-212P-201ENST00000362642 104 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 RNU6-137P-201ENST00000363680 108 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 U3.13-201ENST00000364804 214 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 SNORA9-201ENST00000384215 133 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 SNORA36A-201ENST00000384221 132 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 MIR153-2-201ENST00000385225 87 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 Y_RNA.645-201ENST00000391229 102 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 RPS26P42-201ENST00000413485 326 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 Z98742.2-201ENST00000431564 187 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 MICF-203ENST00000432679 129 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 RPS29P12-201ENST00000460178 152 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 SEM1P1-201ENST00000506694 209 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 SNORA31.16-201ENST00000516773 139 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 Y_RNA.721-201ENST00000517207 102 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 MIR5004-201ENST00000579078 107 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 MIR4506-201ENST00000584693 77 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 MIR4765-201ENST00000585007 77 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 VN1R91P-201ENST00000594377 169 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 AC016727.2-201ENST00000603988 621 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 AC090115.4-201ENST00000609970 188 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 SNORD98-201ENST00000636377 67 ntBASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
PCDHA3Q9Y5H8 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 OR56A5-201ENST00000340110 738 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 RNU6-1159P-201ENST00000362933 107 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 RNU6-1210P-201ENST00000363775 107 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 RNU4-56P-201ENST00000364700 142 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 MIR32-201ENST00000384965 70 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 Y_RNA.592-201ENST00000410274 109 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 OR2AQ1P-201ENST00000451972 200 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 AC093852.1-201ENST00000503587 266 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 ANXA2P1-201ENST00000505539 926 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 RNA5SP112-201ENST00000515937 99 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 MIR2355-201ENST00000517199 87 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 AC091144.1-201ENST00000519573 138 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 AC078899.3-201ENST00000599065 212 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 AC104695.3-201ENST00000604052 296 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 Z98751.3-201ENST00000604447 521 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 AC107871.2-201ENST00000612894 502 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 AC005520.5-201ENST00000613926 164 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 AC091812.1-201ENST00000432235 1948 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 Z75746.1-201ENST00000440243 2080 ntBASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.07□□□□□ -1.92
PCDHA3Q9Y5H8 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
PCDHA3Q9Y5H8 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
PCDHA3Q9Y5H8 RNU6-655P-201ENST00000362858 107 ntBASIC3.06□□□□□ -1.92
PCDHA3Q9Y5H8 Y_RNA.106-201ENST00000363189 100 ntBASIC3.06□□□□□ -1.92
PCDHA3Q9Y5H8 U8.10-201ENST00000384260 133 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms