Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.65□□□□□ -1.99
USP44Q9H0E7 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
USP44Q9H0E7 RNU6-212P-201ENST00000362642 104 ntBASIC2.65□□□□□ -1.99
USP44Q9H0E7 Y_RNA.135-201ENST00000363439 95 ntBASIC2.65□□□□□ -1.99
USP44Q9H0E7 BTF3L4P2-201ENST00000392798 346 ntBASIC2.65□□□□□ -1.99
USP44Q9H0E7 EIF1AXP1-201ENST00000419267 435 ntBASIC2.65□□□□□ -1.99
USP44Q9H0E7 AIMP1P2-201ENST00000425294 312 ntBASIC2.65□□□□□ -1.99
USP44Q9H0E7 RPL23AP95-201ENST00000426806 265 ntBASIC2.65□□□□□ -1.99
USP44Q9H0E7 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.65□□□□□ -1.99
USP44Q9H0E7 AL133396.1-201ENST00000432048 687 ntBASIC2.65□□□□□ -1.99
USP44Q9H0E7 AL161788.1-201ENST00000441805 169 ntBASIC2.65□□□□□ -1.99
USP44Q9H0E7 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.65□□□□□ -1.99
USP44Q9H0E7 RPL30P12-201ENST00000474666 353 ntBASIC2.65□□□□□ -1.99
USP44Q9H0E7 AC016632.1-201ENST00000503994 196 ntBASIC2.65□□□□□ -1.99
USP44Q9H0E7 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.65□□□□□ -1.99
USP44Q9H0E7 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.65□□□□□ -1.99
USP44Q9H0E7 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.65□□□□□ -1.99
USP44Q9H0E7 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.65□□□□□ -1.99
USP44Q9H0E7 AL670379.2-201ENST00000604983 252 ntBASIC2.65□□□□□ -1.99
USP44Q9H0E7 AL355073.2-201ENST00000612106 557 ntBASIC2.65□□□□□ -1.99
USP44Q9H0E7 AC092794.2-201ENST00000620933 563 ntBASIC2.65□□□□□ -1.99
USP44Q9H0E7 RNU6-227P-201ENST00000362865 103 ntBASIC2.64□□□□□ -1.99
USP44Q9H0E7 SNORA38-201ENST00000363946 132 ntBASIC2.64□□□□□ -1.99
USP44Q9H0E7 RNU4-56P-201ENST00000364700 142 ntBASIC2.64□□□□□ -1.99
USP44Q9H0E7 SNORD116-11-201ENST00000383882 92 ntBASIC2.64□□□□□ -1.99
USP44Q9H0E7 RNU6-142P-201ENST00000384019 107 ntBASIC2.64□□□□□ -1.99
USP44Q9H0E7 AL590632.1-201ENST00000424289 371 ntBASIC2.64□□□□□ -1.99
USP44Q9H0E7 AC008267.5-201ENST00000424928 265 ntBASIC2.64□□□□□ -1.99
USP44Q9H0E7 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.64□□□□□ -1.99
USP44Q9H0E7 PPP1R2P5-201ENST00000457256 603 ntBASIC2.64□□□□□ -1.99
USP44Q9H0E7 RPL9P9-202ENST00000466501 579 ntBASIC2.64□□□□□ -1.99
USP44Q9H0E7 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.64□□□□□ -1.99
USP44Q9H0E7 RNU7-30P-201ENST00000516835 62 ntBASIC2.64□□□□□ -1.99
USP44Q9H0E7 IGKV3-31-201ENST00000523109 329 ntBASIC2.64□□□□□ -1.99
USP44Q9H0E7 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.64□□□□□ -1.99
USP44Q9H0E7 IMMP1LP2-201ENST00000552954 492 ntBASIC2.64□□□□□ -1.99
USP44Q9H0E7 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.64□□□□□ -1.99
USP44Q9H0E7 MIR6132-201ENST00000622083 109 ntBASIC2.64□□□□□ -1.99
USP44Q9H0E7 AC097372.5-201ENST00000623665 376 ntBASIC2.64□□□□□ -1.99
USP44Q9H0E7 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
USP44Q9H0E7 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
USP44Q9H0E7 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
USP44Q9H0E7 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.63□□□□□ -1.99
USP44Q9H0E7 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
USP44Q9H0E7 Y_RNA.166-201ENST00000363730 102 ntBASIC2.63□□□□□ -1.99
USP44Q9H0E7 SNORD81.2-201ENST00000365153 76 ntBASIC2.63□□□□□ -1.99
USP44Q9H0E7 RNU6-43P-201ENST00000384302 107 ntBASIC2.63□□□□□ -1.99
USP44Q9H0E7 RNU6-933P-201ENST00000384424 107 ntBASIC2.63□□□□□ -1.99
USP44Q9H0E7 AL139156.1-201ENST00000412785 841 ntBASIC2.63□□□□□ -1.99
USP44Q9H0E7 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.63□□□□□ -1.99
USP44Q9H0E7 AL445646.1-201ENST00000431784 216 ntBASIC2.63□□□□□ -1.99
USP44Q9H0E7 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.63□□□□□ -1.99
USP44Q9H0E7 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.63□□□□□ -1.99
USP44Q9H0E7 AC091951.2-201ENST00000500762 203 ntBASIC2.63□□□□□ -1.99
USP44Q9H0E7 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.63□□□□□ -1.99
USP44Q9H0E7 RNU6-567P-201ENST00000516746 107 ntBASIC2.63□□□□□ -1.99
USP44Q9H0E7 RNU6-612P-201ENST00000516909 102 ntBASIC2.63□□□□□ -1.99
USP44Q9H0E7 SNORA48.11-201ENST00000517015 89 ntBASIC2.63□□□□□ -1.99
USP44Q9H0E7 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.63□□□□□ -1.99
USP44Q9H0E7 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.63□□□□□ -1.99
USP44Q9H0E7 AL138963.2-201ENST00000605137 226 ntBASIC2.63□□□□□ -1.99
USP44Q9H0E7 AC018889.1-201ENST00000605372 397 ntBASIC2.63□□□□□ -1.99
USP44Q9H0E7 ZNF271P-202ENST00000465539 1970 ntBASIC2.63□□□□□ -1.99
USP44Q9H0E7 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
USP44Q9H0E7 AC080100.1-201ENST00000624239 5356 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 RNU6-562P-201ENST00000362731 107 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 RNA5SP393-201ENST00000363423 117 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 SNORD32A-201ENST00000364805 84 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 RNU6-692P-201ENST00000384496 107 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 MIR561-201ENST00000385216 97 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 AL030996.1-201ENST00000411430 235 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.62□□□□□ -1.99
USP44Q9H0E7 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.62□□□□□ -1.99
USP44Q9H0E7 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.62□□□□□ -1.99
USP44Q9H0E7 AL590556.1-201ENST00000423231 483 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 AC244670.1-201ENST00000436879 112 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 USP9YP8-201ENST00000441913 500 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.62□□□□□ -1.99
USP44Q9H0E7 MTND5P20-201ENST00000448677 143 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 MTND1P11-201ENST00000456661 876 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 AMD1P1-201ENST00000457220 922 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 AC140059.1-201ENST00000489238 361 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.62□□□□□ -1.99
USP44Q9H0E7 RPL39P5-202ENST00000512505 151 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 RNU6-507P-201ENST00000516045 100 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 RNU6-566P-201ENST00000516790 107 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.62□□□□□ -1.99
USP44Q9H0E7 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.62□□□□□ -1.99
USP44Q9H0E7 TRAV32-201ENST00000553993 340 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.62□□□□□ -1.99
USP44Q9H0E7 CPDP1-201ENST00000579660 283 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 UBE2V2P2-201ENST00000587677 504 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 AL713866.2-201ENST00000603579 219 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 AC009233.1-201ENST00000616477 371 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.62□□□□□ -1.99
USP44Q9H0E7 AC005336.3-201ENST00000623833 2679 ntBASIC2.62□□□□□ -1.99
USP44Q9H0E7 Y_RNA.184-201ENST00000363884 108 ntBASIC2.61□□□□□ -1.99
USP44Q9H0E7 RNU6-95P-201ENST00000384697 107 ntBASIC2.61□□□□□ -1.99
USP44Q9H0E7 SNORA26.3-201ENST00000391119 136 ntBASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms