Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AL356432.1-201ENST00000405809 419 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 SNORD56-201ENST00000413522 71 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
CDX2Q99626 AL353193.1-201ENST00000421444 268 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.53□□□□□ -2.16
CDX2Q99626 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.53□□□□□ -2.16
CDX2Q99626 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.53□□□□□ -2.16
CDX2Q99626 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.53□□□□□ -2.16
CDX2Q99626 MTCO3P9-201ENST00000506989 781 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 RNU6-718P-201ENST00000516166 105 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 Y_RNA.687-201ENST00000516558 91 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 MTND1P5-201ENST00000517906 940 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 AC034114.1-201ENST00000520293 285 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.53□□□□□ -2.16
CDX2Q99626 AP002453.2-201ENST00000533503 320 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.53□□□□□ -2.16
CDX2Q99626 AC093249.1-201ENST00000567049 203 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.53□□□□□ -2.16
CDX2Q99626 EIF1P4-201ENST00000572664 335 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 MTATP6P3-201ENST00000581686 676 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 AC073539.2-201ENST00000597113 165 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 AL031274.2-201ENST00000599419 203 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 AC073410.2-201ENST00000603240 332 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 AC096772.1-201ENST00000609146 564 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 AC093788.1-201ENST00000609356 927 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 AC022202.1-201ENST00000613515 211 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 AC015540.1-201ENST00000615828 501 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.53□□□□□ -2.16
CDX2Q99626 MIR6767-201ENST00000637302 66 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.53□□□□□ -2.16
CDX2Q99626 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.53□□□□□ -2.16
CDX2Q99626 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.52□□□□□ -2.17
CDX2Q99626 RNU6-1090P-201ENST00000364065 94 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 RNA5SP363-201ENST00000365072 115 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 Y_RNA.367-201ENST00000365544 101 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 SNORA20.2-201ENST00000383922 131 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 RNU2-8P-201ENST00000410727 190 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 RNU6-387P-201ENST00000411331 105 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC1.52□□□□□ -2.17
CDX2Q99626 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.52□□□□□ -2.17
CDX2Q99626 AC096920.1-201ENST00000423991 241 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC1.52□□□□□ -2.17
CDX2Q99626 AL445305.1-201ENST00000432577 575 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 AC000111.3-201ENST00000433478 193 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.52□□□□□ -2.17
CDX2Q99626 AL033528.1-201ENST00000453780 140 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC1.52□□□□□ -2.17
CDX2Q99626 snoU109.2-201ENST00000459316 135 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 SRRM1P2-201ENST00000464531 1192 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.52□□□□□ -2.17
CDX2Q99626 AC011352.1-201ENST00000512300 793 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 SNORD27.1-201ENST00000516319 72 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 RNA5SP61-201ENST00000516453 100 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 SNORA43.2-201ENST00000516652 128 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC1.52□□□□□ -2.17
CDX2Q99626 OR5AL2P-201ENST00000532185 920 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 AC137800.2-201ENST00000574375 120 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 MIR3126-201ENST00000577443 74 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 AL159153.1-201ENST00000619688 317 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 AC068137.3-201ENST00000639191 341 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 AC073869.6-201ENST00000640656 341 ntBASIC1.52□□□□□ -2.17
CDX2Q99626 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
CDX2Q99626 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
CDX2Q99626 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
CDX2Q99626 OR4G2P-201ENST00000328113 903 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 SNORD114-19-201ENST00000363072 75 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 RNU6-529P-201ENST00000363383 104 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 Y_RNA.159-201ENST00000363674 87 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 Y_RNA.390-201ENST00000383932 102 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 RNU6-641P-201ENST00000384006 107 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 RNU6-74P-201ENST00000384235 107 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 RNU6-606P-201ENST00000384721 111 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 MIR216A-201ENST00000385063 110 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 RNU1-139P-201ENST00000391307 165 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 RNU2-23P-201ENST00000410545 195 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 CYCSP33-201ENST00000414485 327 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 C1DP2-201ENST00000418167 426 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 AC073464.1-201ENST00000429823 534 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 RPL23AP6-201ENST00000446637 472 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 snoU109.1-201ENST00000459339 135 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.51□□□□□ -2.17
CDX2Q99626 MTCYBP40-201ENST00000509390 1135 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 AC091133.4-201ENST00000511142 308 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.51□□□□□ -2.17
CDX2Q99626 Y_RNA.704-201ENST00000516851 102 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 MTND4LP26-201ENST00000518144 282 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.51□□□□□ -2.17
CDX2Q99626 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.51□□□□□ -2.17
CDX2Q99626 AP005639.2-201ENST00000527592 928 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC1.51□□□□□ -2.17
CDX2Q99626 TPRKBP2-201ENST00000565969 475 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 MIR3122-201ENST00000577243 73 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 RPL30P11-203ENST00000598995 310 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 AC243960.4-201ENST00000600532 288 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 AL158032.1-201ENST00000605401 106 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 AP001596.2-201ENST00000608410 312 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 AC007684.1-201ENST00000609671 477 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 AC072046.2-201ENST00000618366 268 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 OR5AK4P-201ENST00000635912 903 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms