Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.3□□□□□ -2.04
USP28Q96RU2 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.3□□□□□ -2.04
USP28Q96RU2 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.3□□□□□ -2.04
USP28Q96RU2 AC100830.2-201ENST00000581636 240 ntBASIC2.3□□□□□ -2.04
USP28Q96RU2 AC016727.1-205ENST00000605437 569 ntBASIC2.3□□□□□ -2.04
USP28Q96RU2 AL022345.1-201ENST00000607292 135 ntBASIC2.3□□□□□ -2.04
USP28Q96RU2 AC025253.1-201ENST00000613623 543 ntBASIC2.3□□□□□ -2.04
USP28Q96RU2 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC2.3□□□□□ -2.04
USP28Q96RU2 AC012640.5-201ENST00000623897 319 ntBASIC2.3□□□□□ -2.04
USP28Q96RU2 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
USP28Q96RU2 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
USP28Q96RU2 AC004944.1-201ENST00000517807 3059 ntBASIC2.3□□□□□ -2.04
USP28Q96RU2 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
USP28Q96RU2 RNU6-1059P-201ENST00000363752 98 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 RNU6-105P-201ENST00000363909 104 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 RNU6-1317P-201ENST00000364582 104 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 Y_RNA.509-201ENST00000384506 99 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 RNU6-19P-201ENST00000384718 107 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 RNU2-2P-201ENST00000410396 191 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 RN7SKP158-201ENST00000410453 326 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.29□□□□□ -2.04
USP28Q96RU2 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.29□□□□□ -2.04
USP28Q96RU2 SNAP23P1-201ENST00000433229 246 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC2.29□□□□□ -2.04
USP28Q96RU2 AC080013.2-201ENST00000460866 323 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 MED28P2-201ENST00000475771 317 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 AK3P2-201ENST00000507976 429 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 FGF7P4-201ENST00000509595 295 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 PTP4A1P4-201ENST00000512479 322 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 SNORD19.2-201ENST00000516978 73 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 U2.15-201ENST00000611544 191 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 MIR6840-201ENST00000611937 71 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 U2.16-201ENST00000613119 191 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 U2.12-201ENST00000613778 191 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 U2.20-201ENST00000613956 192 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 U2.9-201ENST00000615427 191 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 U2.11-201ENST00000616345 191 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 U2.2-201ENST00000616535 191 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 U2.3-201ENST00000617785 191 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 U2.19-201ENST00000618602 191 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 RNU2-1-201ENST00000618664 191 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 U2.6-201ENST00000619225 191 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 U2.5-201ENST00000619465 191 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 U2.10-201ENST00000620268 191 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 IGHVIII-44-202ENST00000636235 289 ntBASIC2.29□□□□□ -2.04
USP28Q96RU2 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
USP28Q96RU2 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.29□□□□□ -2.04
USP28Q96RU2 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.28□□□□□ -2.04
USP28Q96RU2 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.28□□□□□ -2.04
USP28Q96RU2 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
USP28Q96RU2 Y_RNA.67-201ENST00000362870 100 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 SNORD56.1-201ENST00000362913 68 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 RNU6-525P-201ENST00000363685 104 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 AL030996.1-201ENST00000411430 235 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 UBE2V1P4-201ENST00000425374 344 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 PTGES3P4-201ENST00000426243 356 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.28□□□□□ -2.04
USP28Q96RU2 MTND3P23-201ENST00000431980 347 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.28□□□□□ -2.04
USP28Q96RU2 AP001324.2-201ENST00000461163 319 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 AP001025.1-201ENST00000486139 332 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 AC018437.1-201ENST00000492214 406 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 AC079140.5-201ENST00000507882 310 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.28□□□□□ -2.04
USP28Q96RU2 RNU6-377P-201ENST00000515965 102 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 RNU6-1213P-201ENST00000517075 94 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 SNORA31.23-201ENST00000517219 133 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.28□□□□□ -2.04
USP28Q96RU2 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.28□□□□□ -2.04
USP28Q96RU2 AC105245.1-201ENST00000581934 244 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 MIR4765-201ENST00000585007 77 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.28□□□□□ -2.04
USP28Q96RU2 MIR3976-201ENST00000606807 139 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 AL161423.1-201ENST00000613700 262 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 MIR6128-201ENST00000615528 109 ntBASIC2.28□□□□□ -2.04
USP28Q96RU2 ZNF658B-202ENST00000615961 3375 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 MTND4P1-201ENST00000457501 1466 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 MTND4P23-201ENST00000447723 1363 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 RBBP8P1-201ENST00000449447 1844 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 OR56A5-201ENST00000340110 738 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 MIR449A-201ENST00000362113 91 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 Y_RNA.61-201ENST00000362835 102 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 RNU6-797P-201ENST00000363101 109 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 RNA5SP125-201ENST00000364843 120 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 RNU6-692P-201ENST00000384496 107 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 MIR147B-201ENST00000390185 80 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
USP28Q96RU2 SNORD23.1-201ENST00000408212 104 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 Z98742.3-201ENST00000418637 326 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 AL356320.1-201ENST00000429616 163 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 FABP5P14-201ENST00000437273 393 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 IPO7P1-201ENST00000442031 636 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 AC107399.1-201ENST00000451226 265 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 MTCO1P29-201ENST00000496868 288 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 SNORA25.11-201ENST00000515935 105 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 Y_RNA.675-201ENST00000516389 149 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.27□□□□□ -2.05
USP28Q96RU2 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.27□□□□□ -2.05
USP28Q96RU2 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.27□□□□□ -2.05
USP28Q96RU2 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms