Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 SDR42E1P4-201ENST00000620894 481 ntBASIC2.45□□□□□ -2.02
SKA1Q96BD8 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.45□□□□□ -2.02
SKA1Q96BD8 ZNF702P-202ENST00000434269 1966 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 Y_RNA.9-201ENST00000362354 101 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 RNU6-1317P-201ENST00000364582 104 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 RNU6-234P-201ENST00000365229 104 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 Y_RNA.373-201ENST00000365600 103 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 Y_RNA.402-201ENST00000383972 102 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 RNU6-128P-201ENST00000383976 107 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 RNU6-933P-201ENST00000384424 107 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.44□□□□□ -2.02
SKA1Q96BD8 AC012306.1-201ENST00000423267 114 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 MTND3P9-201ENST00000429526 346 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 NDUFA5P4-201ENST00000436704 385 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.44□□□□□ -2.02
SKA1Q96BD8 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.44□□□□□ -2.02
SKA1Q96BD8 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
SKA1Q96BD8 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.44□□□□□ -2.02
SKA1Q96BD8 RPS27P21-201ENST00000486977 252 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 AC005741.1-201ENST00000511094 432 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 AC092436.3-201ENST00000511788 257 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.44□□□□□ -2.02
SKA1Q96BD8 MIR449C-201ENST00000516047 92 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 RNA5SP490-201ENST00000517141 136 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 AP000889.2-201ENST00000532684 490 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 EIF4A1P12-201ENST00000551910 141 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.44□□□□□ -2.02
SKA1Q96BD8 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.44□□□□□ -2.02
SKA1Q96BD8 AC064807.4-201ENST00000607201 407 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.44□□□□□ -2.02
SKA1Q96BD8 SNORA43.4-201ENST00000629559 138 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 AL450472.1-202ENST00000637286 180 ntBASIC2.44□□□□□ -2.02
SKA1Q96BD8 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
SKA1Q96BD8 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.43□□□□□ -2.02
SKA1Q96BD8 MIR21-201ENST00000362134 72 ntBASIC2.43□□□□□ -2.02
SKA1Q96BD8 SNORD113-7-201ENST00000363762 77 ntBASIC2.43□□□□□ -2.02
SKA1Q96BD8 MIR518C-201ENST00000384822 101 ntBASIC2.43□□□□□ -2.02
SKA1Q96BD8 MIR208B-201ENST00000401172 77 ntBASIC2.43□□□□□ -2.02
SKA1Q96BD8 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.43□□□□□ -2.02
SKA1Q96BD8 SRIP2-201ENST00000428470 166 ntBASIC2.43□□□□□ -2.02
SKA1Q96BD8 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.43□□□□□ -2.02
SKA1Q96BD8 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.43□□□□□ -2.02
SKA1Q96BD8 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.43□□□□□ -2.02
SKA1Q96BD8 MTCO1P29-201ENST00000496868 288 ntBASIC2.43□□□□□ -2.02
SKA1Q96BD8 TRBVA-201ENST00000498804 316 ntBASIC2.43□□□□□ -2.02
SKA1Q96BD8 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.43□□□□□ -2.02
SKA1Q96BD8 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.43□□□□□ -2.02
SKA1Q96BD8 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.43□□□□□ -2.02
SKA1Q96BD8 AC026371.1-201ENST00000551867 419 ntBASIC2.43□□□□□ -2.02
SKA1Q96BD8 MIR4648-201ENST00000580107 72 ntBASIC2.43□□□□□ -2.02
SKA1Q96BD8 RPL17P51-201ENST00000605218 238 ntBASIC2.43□□□□□ -2.02
SKA1Q96BD8 AL022345.1-201ENST00000607292 135 ntBASIC2.43□□□□□ -2.02
SKA1Q96BD8 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.43□□□□□ -2.02
SKA1Q96BD8 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
SKA1Q96BD8 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.43□□□□□ -2.02
SKA1Q96BD8 Y_RNA.38-201ENST00000362617 102 ntBASIC2.42□□□□□ -2.02
SKA1Q96BD8 RNU6-451P-201ENST00000362921 107 ntBASIC2.42□□□□□ -2.02
SKA1Q96BD8 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
SKA1Q96BD8 RNU11-3P-201ENST00000391111 133 ntBASIC2.42□□□□□ -2.02
SKA1Q96BD8 MTND1P23-201ENST00000416931 372 ntBASIC2.42□□□□□ -2.02
SKA1Q96BD8 SNRPEP10-201ENST00000420249 274 ntBASIC2.42□□□□□ -2.02
SKA1Q96BD8 BX510359.4-201ENST00000423750 193 ntBASIC2.42□□□□□ -2.02
SKA1Q96BD8 AL139415.2-201ENST00000431968 163 ntBASIC2.42□□□□□ -2.02
SKA1Q96BD8 MTND2P29-201ENST00000438595 412 ntBASIC2.42□□□□□ -2.02
SKA1Q96BD8 AMD1P1-201ENST00000457220 922 ntBASIC2.42□□□□□ -2.02
SKA1Q96BD8 RPS29P27-201ENST00000463711 170 ntBASIC2.42□□□□□ -2.02
SKA1Q96BD8 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.42□□□□□ -2.02
SKA1Q96BD8 IGKV3-31-201ENST00000523109 329 ntBASIC2.42□□□□□ -2.02
SKA1Q96BD8 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.42□□□□□ -2.02
SKA1Q96BD8 AC005520.5-201ENST00000613926 164 ntBASIC2.42□□□□□ -2.02
SKA1Q96BD8 AC005336.3-201ENST00000623833 2679 ntBASIC2.42□□□□□ -2.02
SKA1Q96BD8 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.42□□□□□ -2.02
SKA1Q96BD8 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
SKA1Q96BD8 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
SKA1Q96BD8 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
SKA1Q96BD8 RNA5SP289-201ENST00000362332 137 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 RNU1-58P-201ENST00000362413 163 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 RNA5SP276-201ENST00000362580 94 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 SNORD114-30-201ENST00000364448 72 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 RNU1-51P-201ENST00000365345 176 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
SKA1Q96BD8 SNORA36A-201ENST00000384221 132 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 RNU6-378P-201ENST00000384324 107 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 SNORD116-4-201ENST00000384733 96 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
SKA1Q96BD8 RNU6-373P-201ENST00000411247 98 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 AL356379.1-201ENST00000414105 126 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.41□□□□□ -2.02
SKA1Q96BD8 AC096920.1-201ENST00000423991 241 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.41□□□□□ -2.02
SKA1Q96BD8 RNA5SP233-201ENST00000459153 113 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 AC021146.2-201ENST00000504736 556 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.41□□□□□ -2.02
SKA1Q96BD8 Y_RNA.665-201ENST00000516177 98 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 AC016957.1-201ENST00000534895 309 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
SKA1Q96BD8 CYP2C61P-201ENST00000604072 290 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 AC005034.5-201ENST00000604219 466 ntBASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms