Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC28AQ8IWP9 SNORA25.10-201ENST00000515926 124 ntBASIC2.7□□□□□ -1.98
CCDC28AQ8IWP9 RNU6-1114P-201ENST00000516022 107 ntBASIC2.7□□□□□ -1.98
CCDC28AQ8IWP9 MIR2355-201ENST00000517199 87 ntBASIC2.7□□□□□ -1.98
CCDC28AQ8IWP9 HSPE1P18-201ENST00000517602 280 ntBASIC2.7□□□□□ -1.98
CCDC28AQ8IWP9 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC28AQ8IWP9 AC026470.2-201ENST00000561492 181 ntBASIC2.7□□□□□ -1.98
CCDC28AQ8IWP9 AL353621.2-201ENST00000605340 133 ntBASIC2.7□□□□□ -1.98
CCDC28AQ8IWP9 AC007485.1-201ENST00000616755 206 ntBASIC2.7□□□□□ -1.98
CCDC28AQ8IWP9 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 BX322639.1-202ENST00000423987 2213 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 RNU6-222P-201ENST00000362438 107 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 Y_RNA.132-201ENST00000363421 102 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 Y_RNA.148-201ENST00000363557 117 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 SNORD32B-201ENST00000364460 84 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 Y_RNA.358-201ENST00000365491 99 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 AC117470.1-201ENST00000381974 330 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 MIR628-201ENST00000385229 95 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 RNU6-159P-201ENST00000391080 106 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 SNORA12-201ENST00000391162 147 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 AC114482.1-201ENST00000418010 247 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 RNU7-169P-201ENST00000459456 61 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 AC083906.5-201ENST00000503722 328 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 RNU6-911P-201ENST00000516523 104 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 SNORA48.11-201ENST00000517015 89 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 GNAI2P1-201ENST00000541815 315 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 AC018630.3-201ENST00000542637 96 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 MIR5187-201ENST00000583479 76 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 AC016727.2-201ENST00000603988 621 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 AC007742.2-201ENST00000618226 398 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 U2.1-201ENST00000618978 145 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 AL606534.2-204ENST00000635008 178 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 MIR4272-201ENST00000635924 64 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC28AQ8IWP9 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 Z82209.1-201ENST00000422141 2135 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 RNU5F-3P-201ENST00000363767 117 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 RNU6-944P-201ENST00000364023 107 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 RNU6-280P-201ENST00000364145 104 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 RNY3P11-201ENST00000364153 102 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 Y_RNA.216-201ENST00000364205 93 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 Y_RNA.326-201ENST00000365176 113 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 AL590004.1-201ENST00000405321 300 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 RNU2-25P-201ENST00000411041 191 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 AC004975.1-201ENST00000428733 208 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 AC104389.3-201ENST00000445629 235 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 AC103975.1-201ENST00000482506 483 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 RNU6-475P-201ENST00000516073 104 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 RNU4-77P-201ENST00000516692 156 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 AC090517.1-201ENST00000569307 266 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 MIR4697-201ENST00000582977 78 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 VN1R91P-201ENST00000594377 169 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 SNRPGP20-201ENST00000604477 205 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 AL355297.2-201ENST00000604792 129 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 RPL17P51-201ENST00000605218 238 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 Y_RNA.812-201ENST00000610788 101 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 Y_RNA.784-201ENST00000613803 101 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 AL162274.2-201ENST00000614406 332 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 Y_RNA.787-201ENST00000616522 101 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 Y_RNA.780-201ENST00000617336 101 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 Y_RNA.801-201ENST00000619005 101 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 AP003355.3-201ENST00000623465 114 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 AC138305.3-201ENST00000624988 240 ntBASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.68□□□□□ -1.98
CCDC28AQ8IWP9 ZNF204P-201ENST00000416749 2397 ntBASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 Y_RNA.126-201ENST00000363382 111 ntBASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 RNU6-245P-201ENST00000384020 107 ntBASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 Y_RNA.557-201ENST00000384680 107 ntBASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 MIR10B-201ENST00000385011 110 ntBASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 MIR1294-201ENST00000408503 142 ntBASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 RPS29P7-201ENST00000439662 171 ntBASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 AC132942.1-201ENST00000486753 483 ntBASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 AC109329.2-201ENST00000519658 482 ntBASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 AC007458.1-201ENST00000542812 373 ntBASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 AC023824.2-201ENST00000566185 400 ntBASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 AC006600.1-201ENST00000572529 153 ntBASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 RPL12P50-201ENST00000603116 116 ntBASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 AC016925.2-201ENST00000605108 242 ntBASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 AC005562.2-201ENST00000618264 111 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms