Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RNU6-793P-201ENST00000384233 104 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AL590556.1-201ENST00000423231 483 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC0.08□□□□□ -2.4
CHD9Q3L8U1 PAXBP1P1-201ENST00000449315 447 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 GAPDHP17-201ENST00000449858 1001 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AC244505.3-201ENST00000454598 187 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 RNU4-54P-201ENST00000516428 129 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AC022868.1-201ENST00000517767 391 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC0.08□□□□□ -2.4
CHD9Q3L8U1 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AC015688.6-201ENST00000577737 104 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 MIR4431-201ENST00000579990 94 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AF038458.1-201ENST00000588406 262 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 MIR8063-201ENST00000621930 81 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AL603839.4-201ENST00000624658 1005 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 RNU4-79P-201ENST00000362764 141 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 RNU6-654P-201ENST00000364373 107 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 Y_RNA.332-201ENST00000365271 113 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 Y_RNA.568-201ENST00000384742 113 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 ISCA1P1-201ENST00000426679 387 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 TXNL1P1-201ENST00000429528 554 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AC104332.1-201ENST00000440471 797 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 MTATP6P30-201ENST00000443540 664 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 RPS27AP8-201ENST00000452665 445 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 RNU1-131P-201ENST00000458943 161 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 RNU6-714P-201ENST00000516963 103 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.08□□□□□ -2.4
CHD9Q3L8U1 RNY1P9-201ENST00000532431 109 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AC022523.2-201ENST00000561045 150 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AC009712.1-201ENST00000564938 316 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC0.08□□□□□ -2.4
CHD9Q3L8U1 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AC009509.4-201ENST00000619202 509 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 RNU6-359P-201ENST00000365466 108 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 RNU6-46P-201ENST00000383860 107 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 RNU6-969P-201ENST00000383900 105 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 MIR186-201ENST00000384988 86 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 MIR301A-201ENST00000385261 86 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 RNA5SP219-201ENST00000390940 113 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 C8orf59P1-201ENST00000429930 303 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.08□□□□□ -2.4
CHD9Q3L8U1 FCF1P6-201ENST00000456841 595 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AC010631.1-201ENST00000474150 156 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 RPS26P48-201ENST00000491713 339 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC0.08□□□□□ -2.4
CHD9Q3L8U1 SNORA31.19-201ENST00000517079 126 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.08□□□□□ -2.4
CHD9Q3L8U1 IGKV1-22-201ENST00000524313 326 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 ANKRD36BP1-202ENST00000604892 1417 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 LARP7P1-201ENST00000605576 316 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.08□□□□□ -2.4
CHD9Q3L8U1 ZNF736P9Y-201ENST00000439586 1345 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 SNORD114-16-201ENST00000363044 70 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 SNORA63D-201ENST00000364359 132 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 RNU6-505P-201ENST00000384427 107 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 MIR10A-201ENST00000385043 110 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC0.07□□□□□ -2.4
CHD9Q3L8U1 OR2AQ1P-201ENST00000451972 200 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 CECR9-201ENST00000453421 199 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.07□□□□□ -2.4
CHD9Q3L8U1 RNU7-94P-201ENST00000459576 63 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.07□□□□□ -2.4
CHD9Q3L8U1 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC0.07□□□□□ -2.4
CHD9Q3L8U1 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC0.07□□□□□ -2.4
CHD9Q3L8U1 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC0.07□□□□□ -2.4
CHD9Q3L8U1 AC093012.1-202ENST00000549403 582 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 SNORA77B-201ENST00000578179 125 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 AL355297.3-201ENST00000604082 446 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 RAC1P9-201ENST00000604990 392 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 RNU6-650P-201ENST00000365658 111 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 RNU6-514P-201ENST00000384208 107 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 RNU6-1222P-201ENST00000384615 107 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 AL133475.1-201ENST00000404414 305 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 AL359634.1-202ENST00000404721 284 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC0.07□□□□□ -2.4
CHD9Q3L8U1 MRPL42P4-201ENST00000453267 443 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 FABP5P15-201ENST00000453566 214 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 RNU6-333P-201ENST00000459117 107 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 AC002350.1-201ENST00000490759 375 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.07□□□□□ -2.4
CHD9Q3L8U1 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC0.07□□□□□ -2.4
CHD9Q3L8U1 MIR548AX-201ENST00000580117 73 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 MIR5093-201ENST00000583199 100 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 PRELID3BP2-201ENST00000605362 201 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 AL360219.1-201ENST00000610230 366 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 AL159153.1-201ENST00000619688 317 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 AC120349.3-201ENST00000624377 529 ntBASIC0.07□□□□□ -2.4
CHD9Q3L8U1 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC0.06□□□□□ -2.4
CHD9Q3L8U1 RNU6-853P-201ENST00000364306 107 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 U8.7-201ENST00000364940 136 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 RNU6-110P-201ENST00000384508 104 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC0.06□□□□□ -2.4
CHD9Q3L8U1 SCARNA8-201ENST00000515924 131 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.06□□□□□ -2.4
CHD9Q3L8U1 SEPT14P17-201ENST00000617978 177 ntBASIC0.06□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms