Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU6-181P-201ENST00000363225 107 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 RNU4-91P-201ENST00000364778 135 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 RNU6-336P-201ENST00000364891 107 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 SNORA25.9-201ENST00000365087 128 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 RNU6-393P-201ENST00000384475 107 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 SNORD70.1-201ENST00000391007 85 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 SNORA12-201ENST00000391162 147 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 AP000275.1-201ENST00000411943 390 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.13□□□□□ -2.23
FOXA1P55317 PIGFP2-201ENST00000421400 651 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 EIF4EP2-201ENST00000422816 654 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.13□□□□□ -2.23
FOXA1P55317 UBE2V1P4-201ENST00000425374 344 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 AC244505.5-201ENST00000443639 207 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 PRPS1P1-201ENST00000445305 876 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 MTND1P18-201ENST00000448191 573 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.13□□□□□ -2.23
FOXA1P55317 MTND3P7-201ENST00000474435 343 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 AC010486.2-201ENST00000505572 483 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 MTND3P5-201ENST00000512798 333 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 MIR449C-201ENST00000516047 92 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 RNU2-69P-201ENST00000516061 100 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 RNU6-445P-201ENST00000516949 107 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC1.13□□□□□ -2.23
FOXA1P55317 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC1.13□□□□□ -2.23
FOXA1P55317 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC1.13□□□□□ -2.23
FOXA1P55317 TRAV32-201ENST00000553993 340 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 AC008269.2-201ENST00000561915 1105 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 MIR3913-1-201ENST00000577744 102 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 AC008752.3-201ENST00000588113 712 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.13□□□□□ -2.23
FOXA1P55317 Z94722.1-201ENST00000604328 474 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 AC073413.2-201ENST00000604332 360 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 AL034555.1-201ENST00000604816 211 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.13□□□□□ -2.23
FOXA1P55317 AC022418.1-201ENST00000624118 445 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 SNORD98-201ENST00000636377 67 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.13□□□□□ -2.23
FOXA1P55317 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.13□□□□□ -2.23
FOXA1P55317 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.13□□□□□ -2.23
FOXA1P55317 SNORD32B-201ENST00000364460 84 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 RNU6-392P-201ENST00000364926 101 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 RNU6-43P-201ENST00000384302 107 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 RNU6-434P-201ENST00000384376 107 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 RNU6-1127P-201ENST00000384580 107 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 SNORA16.2-201ENST00000390991 127 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.12□□□□□ -2.23
FOXA1P55317 MIR1285-1-201ENST00000408593 84 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
FOXA1P55317 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC1.12□□□□□ -2.23
FOXA1P55317 MTCO2P34-201ENST00000421994 607 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 SDAD1P3-201ENST00000427380 333 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC1.12□□□□□ -2.23
FOXA1P55317 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.12□□□□□ -2.23
FOXA1P55317 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.12□□□□□ -2.23
FOXA1P55317 AL031667.1-201ENST00000440222 725 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 AC013470.1-201ENST00000453438 462 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.12□□□□□ -2.23
FOXA1P55317 AC022364.2-201ENST00000457963 554 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 AC145146.1-201ENST00000496370 254 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 LRRC34P2-201ENST00000514850 553 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 RN7SKP179-201ENST00000516126 217 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.12□□□□□ -2.23
FOXA1P55317 AC109479.2-201ENST00000517842 174 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC1.12□□□□□ -2.23
FOXA1P55317 BNIP3P16-201ENST00000589779 534 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 AC107304.1-201ENST00000604229 296 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 AC103810.8-201ENST00000607347 118 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
FOXA1P55317 uc_338.11-201ENST00000619132 160 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 MIR7111-201ENST00000619751 72 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 AC130454.1-201ENST00000622948 401 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 AC009161.2-201ENST00000624626 138 ntBASIC1.12□□□□□ -2.23
FOXA1P55317 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
FOXA1P55317 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.11□□□□□ -2.23
FOXA1P55317 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.11□□□□□ -2.23
FOXA1P55317 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.11□□□□□ -2.23
FOXA1P55317 RNU6-1141P-201ENST00000364520 107 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 Y_RNA.480-201ENST00000384364 102 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 RNU2-9P-201ENST00000410194 145 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 AC009310.1-201ENST00000414414 451 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.11□□□□□ -2.23
FOXA1P55317 AL591704.2-201ENST00000421658 181 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 AC010975.2-201ENST00000427781 588 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 AC244670.1-201ENST00000436879 112 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC1.11□□□□□ -2.23
FOXA1P55317 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC1.11□□□□□ -2.23
FOXA1P55317 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.11□□□□□ -2.23
FOXA1P55317 SCARNA18-201ENST00000459004 134 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 AC132942.1-201ENST00000486753 483 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 AC079382.1-201ENST00000493346 557 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 AC093852.1-201ENST00000503587 266 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 AC022447.4-201ENST00000504053 364 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 SNORA31.16-201ENST00000516773 139 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 SNORA25.17-201ENST00000517184 124 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.11□□□□□ -2.23
FOXA1P55317 AP002963.1-201ENST00000530590 184 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 AC145350.1-201ENST00000567426 208 ntBASIC1.11□□□□□ -2.23
FOXA1P55317 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms